Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq268 230 7e-57 >seq268 Length=5072910 Score = 230 bits (254), Expect = 7e-57 Identities = 316/442 (71%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 2874 ATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAGGCCAGGGTGCCGATGGAGTGGGC 2933 |||||| ||| ||| | | ||| |||| || | |||||||||||||| | | || Sbjct 4836847 ATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAGGT 4836906 Query 2934 AATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGA 2993 ||||| || |||||||||||||| ||||||||||| |||| |||| || || |||| Sbjct 4836907 AATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCAAG 4836966 Query 2994 ACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAACGAATCCAAGGA 3053 |||||| ||||| ||| ||||| ||||||||||||||| ||| ||| ||| | Sbjct 4836967 TCCACCCAGGCCTGGCTCT-GCCCACCTACAACAACCACCTCTACTAACAAATT-----A 4837020 Query 3054 CCCAG--CGGAGGCNNNNNNNNNNNNNNATTCTTTGGATTCAGCACCCCCTGGGGATACT 3111 | || | || | |||||||| |||||||||| ||| ||||| Sbjct 4837021 CTCAAACCTCTAGCAACAATGACAAAGAGTACTTTGGATACAGCACCCCC-GGGAATACT 4837079 Query 3112 TTGACTACAATCGATTCCACTGCCACTTTTCCCCGCGAGACTGGCAACGACTCATCAACA 3171 |||||| ||||| |||||||| ||||| || || |||||||||| |||| |||||||| Sbjct 4837080 TTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCAACA 4837139 Query 3172 ACAACTGGGGCATCCGTCCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAAG 3231 ||||| ||| | || | |||||| ||||| ||| ||||| || || |||| Sbjct 4837140 ACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGCTC---AACATTCAAGTCAAAG 4837196 Query 3232 AGGTCACGGTCCAAGACTTCAACACCACCATCGGCAACAACCTCACCAGTACGGTCCAGG 3291 |||||| | ||||||| || || ||||||| ||| |||||||| || |||||| Sbjct 4837197 AGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCCAGG 4837256 Query 3292 TCTTTGCGGACAAGGACTACCA 3313 | |||| |||| ||||| || Sbjct 4837257 TGTTTGTGGACTCAGACTATCA 4837278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14905129569915