Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq268 129 2e-26 >seq268 Length=5072910 Score = 129 bits (142), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 2300 CCGAAACCCAAGGCCAATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCCTGGG 2359 || ||||| ||||||||||| ||| | ||||| | | | ||||||||| | | ||| Sbjct 4836343 CCAAAACCTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGG 4836402 Query 2360 TACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGCTGAC 2419 || || ||||| | || | ||| | ||||| || || || || |||| || | | Sbjct 4836403 TATAAATATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTC 4836462 Query 2420 GAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAACCCT 2479 | ||| | |||||| | ||||| | || |||||| ||||||| | || | Sbjct 4836463 --TGCTGCTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGG-TACAATTCA 4836519 Query 2480 TACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTC-GCTTCTGACACTTC 2538 ||| ||| |||||||||| | || | ||| |||||||||| ||| || | | ||||| Sbjct 4836520 TACTTCAGGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCTCAACTAC--ATACTTC 4836577 Query 2539 TTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACCTCT 2598 ||||||||| || || || ||||| ||||||||| |||||| |||| | || | | Sbjct 4836578 TTTTGGGGGCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-T 4836636 Query 2599 TGGCCTGGTT 2608 |||||||||| Sbjct 4836637 TGGCCTGGTT 4836646 Score = 127 bits (140), Expect = 6e-26 Identities = 268/391 (69%), Gaps = 19/391 (5%) Strand=Plus/Plus Query 2849 CAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGGTCA 2908 || |||||||| | | | |||||| | || || |||||||||| |||||| || Sbjct 4836886 CAGGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTG 4836945 Query 2909 GAGAGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCAC 2968 | | | ||| ||||| || |||| ||||| || |||| ||||||||||||||| Sbjct 4836946 GGAAACTGAATCATCACCAAGTCCACCCAGGCCTGGCTC-TGCCCACCTACAACAACCAC 4837004 Query 2969 CTGTACCTGCGG----CTCGG--CTCGAGCAAC---GCCAGCGACACCTTCAACGGATTC 3019 || ||| | ||| ||| |||||| | || || ||| |||| | Sbjct 4837005 CTCTACTAACAAATTACTCAAACCTCTAGCAACAATGACAAAGAGTACTTT---GGATAC 4837061 Query 3020 TCCACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAGAGAC 3079 ||||||| ||| ||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct 4837062 AGCACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGAC 4837120 Query 3080 TGGCAAAGGCTCATCAACAACCACTGGGGACTGC-GCCCCAAAAGCATGCAAGTCCGCAT 3138 ||||| | | |||||||||| || |||||| | | |||||| | ||| | | Sbjct 4837121 TGGCAGCGACCCATCAACAACAAC-AGGGACTTCTGACCCAAA---AAACAAAACTTTAA 4837176 Query 3139 CTTCAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGACGACCGTATCCAACAA 3198 ||||||| ||||| || ||||||| ||| || | | |||| | |||| || Sbjct 4837177 GCTCAACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAA 4837236 Query 3199 CCTCACCAGCACGGTCCAGATCTTTGCGGAC 3229 |||||| ||| ||||| | |||| |||| Sbjct 4837237 CCTCACTTCCACCATCCAGGTGTTTGTGGAC 4837267 Score = 78.8 bits (86), Expect = 3e-11 Identities = 119/167 (71%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 1591 CTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTC 1650 ||| || | ||| || |||||| ||| || |||||| ||| |||||| |||| || | Sbjct 4835596 CTCCACTCTGGTCATCATCACCAGCAACACCAACATGCATGTTGTGGTGTATGGAAATTT 4835655 Query 1651 CACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGCG 1710 |||||||||||| ||||| | |||| | ||| | ||||| | |||| |||| || | Sbjct 4835656 GGGGACCTTTGAACATCAGCAACTGCTGAAGGACAGAATGTTTAAATTTAAACTGATTTG 4835715 Query 1711 GCG-GCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAA 1756 | | || ||| |||| | |||| | ||||| | || |||||| Sbjct 4835716 GAGAATTCAACCCACATTTGGCCAAG-TCACCAAACCAGAGGTCAAA 4835761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14901930357730