Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq268 192 2e-45 >seq268 Length=5072910 Score = 192 bits (212), Expect = 2e-45 Identities = 273/379 (72%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 3085 GGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGG 3144 ||||||||||| | | |||||| | ||||||||||||||||| ||||||||||| ||||| Sbjct 4836888 GGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGG 4836947 Query 3145 AGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3204 | || | |||| |||||| | || ||||| || |||| | ||||||||||||| | Sbjct 4836948 AAACTGAATCATCACCAAGTCCACCCAGGCCTGGCTC-TGCCCACCTACAACAACCACCT 4837006 Query 3205 GTACCAAGCCATCAC---AAGCGGAACAAACCCAGACTCAAATACCCAATATGCTGGATA 3261 ||| || || || || | | ||| ||| ||| | || |||||| Sbjct 4837007 CTACTAACAAATTACTCAAACCTCTAGCAACAATGAC--AAAGAG----TACTTTGGATA 4837060 Query 3262 CAGCACCCCCTGGGGGTACTTTGATTTCAACAGATTCCACTGCCATTTCTCTCCAAGAGA 3321 |||||||||| ||| |||||||| || || | |||||||| || |||||||| |||| Sbjct 4837061 CAGCACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGA 4837119 Query 3322 CTGGCAGAGACTCATCAACAACCATTGGGGGATTAGACCGAAAGCACTCAAATTCAAGAT 3381 ||||||| ||| |||||||||| | ||| | |||| ||| || || || ||| Sbjct 4837120 CTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAG-- 4837177 Query 3382 ATTCAATGTGCAAGTTAAAGAAGTCACGACGCAAGACCAGACAAAGACTATTGCTAACAA 3441 |||| | ||||| ||||| |||| ||| |||||| || | ||| || || || || Sbjct 4837178 -CTCAACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAA 4837236 Query 3442 CCTTACCTCTACAATCCAG 3460 ||| || || || |||||| Sbjct 4837237 CCTCACTTCCACCATCCAG 4837255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16306384506945