Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq268 127 6e-26 >seq268 Length=5072910 Score = 127 bits (140), Expect = 6e-26 Identities = 350/527 (66%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 2600 ATGGCTACAGGAGGAGGCGGTCCGATGGCAGACGATAACCAGGGCGCCGAGGGAGTGGGT 2659 |||||| |||| || | | || |||| || || |||||||| ||||| | | | ||| Sbjct 4836847 ATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAGGT 4836906 Query 2660 AATTCCTCAGGTGATTGGCATTGCGATACCAAGTGGATGGGAGACCACGTCATTACAAAG 2719 ||||| ||||| |||||||||| ||| || | || ||||| || |||| || ||| Sbjct 4836907 AATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCAAG 4836966 Query 2720 TCAACCAGAACTTGGGTGCTCCCCACTTACGGGAATCATCTCTACGGGCCTATCAACTTT 2779 || ||| | ||| | || ||||| ||| || || |||||| || ||| || Sbjct 4836967 TCCACCCAGGCCTGGCT-CTGCCCACCTACAACAACCACCTCTAC-----TAACAAATTA 4837020 Query 2780 GACGGCACCACAGGTTCGGGTGCTAATGCAGCCTATGCAGGATACAAGACTCCCTGGGGG 2839 | ||| | | || || | || || |||||| || ||| ||| Sbjct 4837021 CTCAA-ACCTCTAGCAACAATGACAAAGAGTACTTTG---GATACAGCACCCCC-GGGAA 4837075 Query 2840 TACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAAAGACTCATC 2899 ||||||||||| ||||| ||||| || |||||||| || |||||||||| ||| |||| Sbjct 4837076 TACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATC 4837135 Query 2900 AACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAACGTCCAAGTC 2959 |||||| ||| | | || | || ||| || ||| | ||| | ||| | |||||| Sbjct 4837136 AACAACAACAGGGACTTCTGACCCAAAAAAC-AAAACTTTAAG--CTCAACATTCAAGTC 4837192 Query 2960 AAAGAAGTTACAACACAAGATTCAACGAAAACAATTGCCAACAATCTCACCAGCACCGTA 3019 ||||| || | || ||||| || | || || ||||| || ||||| |||| | Sbjct 4837193 AAAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATC 4837252 Query 3020 CAGATCTTTGCGGACGAGAACTACGACTTACCATATGTATTAGGCAGTGCTACACAAGGC 3079 ||| | |||| |||| |||| | ||| ||| || | ||| | ||||||| Sbjct 4837253 CAGGTGTTTGTGGACTCAGACTATCAGTTAGTATACTTAGCTGCTAGTAC-CCACAAGGG 4837311 Query 3080 ACATTTC-CTCCATTTCCCAATGATGTATTTATGTTACCACAATATG 3125 | || || |||| |||| || |||||| |||| ||||||| Sbjct 4837312 CTGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATG 4837358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14066935977445