Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq268 244 3e-61 >seq268 Length=5072910 Score = 244 bits (270), Expect = 3e-61 Identities = 340/475 (72%), Gaps = 27/475 (6%) Strand=Plus/Plus Query 2760 CCTCAAGTTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATA 2819 ||||| ||| ||| || | ||||| || | || ||| | | ||| |||| || | | Sbjct 4836824 CCTCATATTTAGGATCTAAACCAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACA 4836883 Query 2820 ACCAAGGTGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGA 2879 |||| |||||||||| | | || ||| | || ||| |||||||||| |||||| || Sbjct 4836884 ACCAGGGTGCCGATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGAC 4836943 Query 2880 TGGGGGACAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACC 2939 |||| || || || ||||||||||||||| ||||| | ||||||| ||||||||||| Sbjct 4836944 TGGGAAACTGAATCATCACCAAGTCCACCCAGGCCTGGCT-CTGCCCACCTACAACAACC 4837002 Query 2940 ACCAGTACCGAGAGATCA---AAAGCGGCTCCGTCGACGGAAGCAACGCCAACGCCTACT 2996 ||| ||| | | || | ||| | || | | | ||| | ||| | |||| Sbjct 4837003 ACCTCTACTAACAAATTACTCAAA-------CCTCTA--GCAACAATGACAAAGAGTACT 4837053 Query 2997 TTGGATACAGCACCCCCTGGGGGTACTTTGACTTTAACCGCTTCCACAGCCACTGGAGCC 3056 ||||||||||||||||| ||| |||||||||||||| ||||||||| | |||| | Sbjct 4837054 TTGGATACAGCACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTC 4837112 Query 3057 CCCGAGACTGGCAAAGACTCATCAACAACTACTGGGGCTTCAGACCCCGGTCCCTCAGAG 3116 | |||||||||| ||| |||||||||| || ||| |||| ||||| | | Sbjct 4837113 CTTGAGACTGGCAGCGACCCATCAACAACAACAGGGACTTCTGACCC--------AAAAA 4837164 Query 3117 TCAAAATCT-----TCAACATTCAAGTCAAAGAGGTCACGGTGCAGGACTCCACCACNNN 3171 ||||| | |||||||||||||||||||||||| | || ||| ||||| Sbjct 4837165 ACAAAACTTTAAGCTCAACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGAC 4837224 Query 3172 NATCGCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGACTACCAG 3226 |||||||| |||||||| |||||| |||| |||||| |||| ||||| ||| Sbjct 4837225 CATCGCCAATAACCTCACTTCCACCATCCAGGTGTTTGTGGACTCAGACTATCAG 4837279 Score = 170 bits (188), Expect = 6e-39 Identities = 248/344 (72%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 2276 CTTGAAG-CGGGCCCACCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGG 2334 ||| ||| | |||| || ||||| || ||||||||||||||||||| | |||| Sbjct 4836327 CTTAAAGTCTGGCCTGCCAAAACCTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGG 4836386 Query 2335 TCTTGTGCTGCCTGGTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCC 2394 ||||||| || | || ||||| |||||| | || | ||| |||| || ||||||||| Sbjct 4836387 TCTTGTGTTGTCCGGGTATAAATATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCC 4836446 Query 2395 TGTCAACAGGGCAGACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGA 2454 |||||| ||||| | | || | |||||| || | |||||| |||||||| | Sbjct 4836447 CATCAACAAGGCAGTC--TGCTGCTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAA 4836504 Query 2455 GGCGGGAGACAACCCCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCT 2514 |||||| |||| | ||| ||| |||||||||| | || | ||| ||||||||||||| Sbjct 4836505 GGCGGG-TACAATTCATACTTCAGGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCT 4836563 Query 2515 CGCCGACGACACATCCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAG 2574 | | || | || || || ||||| || ||| || || || || ||||| | || | Sbjct 4836564 CAACTAC-ATACTTCTTTTGGGGGCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAA 4836622 Query 2575 GGTTCTCGAACCTTTTGGCCTGGTTGAAGAGGGTGCTAAGACGG 2618 ||||| | | | |||||||||||| || | | || |||||||| Sbjct 4836623 AGTTCTTGCA-CATTTGGCCTGGTTTAACAAGCTGTTAAGACGG 4836665 Score = 80.6 bits (88), Expect = 8e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1606 CAATACAAACATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCC 1665 ||| || |||||| ||| |||||| |||| |||| |||||||||||| ||||| | Sbjct 4835620 CAACACCAACATGCATGTTGTGGTGTATGGAAATTTGGGGACCTTTGAACATCAGCAACT 4835679 Query 1666 GCTGGAGGACCGCATGTTCAAATTTGAACTGA 1697 |||| ||||| | ||||| |||||| |||||| Sbjct 4835680 GCTGAAGGACAGAATGTTTAAATTTAAACTGA 4835711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14738770536295