Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_006260.1
Length=4721
Score E
Sequences producing significant alignments: (Bits) Value
seq268 351 3e-93
>seq268
Length=5072910
Score = 351 bits (388), Expect = 3e-93
Identities = 529/742 (71%), Gaps = 20/742 (3%)
Strand=Plus/Plus
Query 2829 CAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGGAGTGG 2888
|| ||||| |||| ||| | |||||||||| || | ||| | |||||||| | | | |
Sbjct 4836845 CAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAG 4836904
Query 2889 GTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCA 2948
||||| | ||||||||||||||||| |||||| ||| ||||| || || |||| ||||
Sbjct 4836905 GTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCA 4836964
Query 2949 CCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCA 3008
||||| ||| ||| ||||||||||||||||||||||||||| | ||||| |
Sbjct 4836965 AGTCCACCCAGGCCT-GGCTCTGCCCACCTACAACAACCACCTCTACTAACAAAT---TA 4837020
Query 3009 GTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGT 3068
| |||| | ||| | ||| ||||| ||||| || |||||||||||| ||| |
Sbjct 4837021 CTCAAACCTC---TAGCAACAATGACAAAGAGTACTTTGGATACAGCACCCCC-GGGAAT 4837076
Query 3069 ATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCA 3128
| ||||||||||| | |||||||| |||||||| || | ||||||||||||| |||||
Sbjct 4837077 ACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCA 4837136
Query 3129 ACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTCTTCAACATCCAGGTCA 3188
|||||||| ||| ||| | ||||| || | || |||| ||||||| || ||||
Sbjct 4837137 ACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGC---TCAACATTCAAGTCA 4837193
Query 3189 AGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGATTC 3248
| ||||||| ||| | ||| || | ||||||||| |||||||| || ||| || |
Sbjct 4837194 AAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCC 4837253
Query 3249 AGGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGCT-CTGCGCACCAGGGC 3307
|||| || |||||| || || ||| | ||| | | ||| | | ||| |||||
Sbjct 4837254 AGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC-TTAGCTGCTAGTACCCACAAGGGC 4837312
Query 3308 TGCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTACCTGACTCTC 3367
|| || || || | || || || || ||| | ||||| || ||||| |||||||||
Sbjct 4837313 TGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATGGCTATCTGACTCTC 4837372
Query 3368 AACAATGGCAGTCAGTCTGTGG---GACGTTCC---TCCTTCTACTGCCTGGAGTACTTC 3421
|| |||||| || | ||| || |||| ||||| | | | |||| || |||
Sbjct 4837373 AATGATGGCAACCAAGCACTGGAATGAGCTTCCTTTTCCTTTCATTACTTGGAATATTTC 4837432
Query 3422 CCCTCTCAGATGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTCGAGGACGTG 3481
|| |||||||||| ||| ||| ||||||| ||| |||| || ||| |||
Sbjct 4837433 TCCAGTCAGATGCTGCAAACCAGCAGCAACTTTACCTTCTCATACATGTTTGAGAGTGTG 4837492
Query 3482 CCTTTCCACAGCAGCTA-CGCACACAGCCAGAGCCTGGACCGGCTGATGAATCCCCTCAT 3540
| ||||||||| || || || ||||||||| | | ||| || ||||||||| ||
Sbjct 4837493 CTCTTCCACAGCTCATATTGCCCATAGCCAGAGCATCAATTGGCAGAAGAATCCCCTGAT 4837552
Query 3541 CGACCAGTACTTGTACTACCTG 3562
|| || || |||| || |||
Sbjct 4837553 TGATCAATATTTGTGGTATCTG 4837574
Score = 143 bits (158), Expect = 8e-31
Identities = 309/454 (68%), Gaps = 10/454 (2%)
Strand=Plus/Plus
Query 2197 GAGCAATAAA-TGACTTAAACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCG 2255
|| ||||||| | | ||||| || ||||||| |||||||| ||||| | ||| | |
Sbjct 4836234 GAACAATAAAATTATTTAAAT-AGACATGGCTG---ATGGTTATTTTCCAAACTGGTTGG 4836289
Query 2256 AGGACAACCTCTCTGAGGGCATTCGCGAGTGGTGGGACCTGAAACCTGGAGCCCCGAAAC 2315
| | |||||| | | | |||||| || | || |||| || ||||
Sbjct 4836290 AAATTATTCTCTCTTACAGGTTCTAAGAGTGGCAAAACTTAAAGTCTGGCCTGCCAAAAC 4836349
Query 2316 CCAAAGCCAACCAGCAAAAGCAGGACAACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGT 2375
| || ||||| ||||| | || ||| | | ||||| ||| | | || || || |
Sbjct 4836350 CTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGGTATAAAT 4836409
Query 2376 ACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGG 2435
| ||| | || | |||| | || ||||| || |||||| ||||| ||| | | || |
Sbjct 4836410 ATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTCT--GCTG 4836467
Query 2436 CCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGC 2495
| || |||||| |||||||||| || ||||||| || |||||| ||||| | ||| |
Sbjct 4836468 CTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTCATACTTCA 4836526
Query 2496 GGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCATTTGGGG 2555
|||| |||||| || | ||| |||||||| || ||| | |||| || |||||||
Sbjct 4836527 GGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCT-CAACTACATACTTCTTTTGGGG 4836585
Query 2556 GCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGG 2615
|||| ||| ||| || |||||||| | ||| ||||| | || | | || ||||
Sbjct 4836586 GCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TTGGCCTGG 4836644
Query 2616 TTGAGGAAGGCGCTAAGACGGCTCCTGCAAAGAA 2649
|| | ||| | |||||||| ||||| |||||
Sbjct 4836645 TTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAA 4836678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14991508298910
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