Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq268 351 3e-93 >seq268 Length=5072910 Score = 351 bits (388), Expect = 3e-93 Identities = 529/742 (71%), Gaps = 20/742 (3%) Strand=Plus/Plus Query 2829 CAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGGAGTGG 2888 || ||||| |||| ||| | |||||||||| || | ||| | |||||||| | | | | Sbjct 4836845 CAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAG 4836904 Query 2889 GTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCA 2948 ||||| | ||||||||||||||||| |||||| ||| ||||| || || |||| |||| Sbjct 4836905 GTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCA 4836964 Query 2949 CCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCA 3008 ||||| ||| ||| ||||||||||||||||||||||||||| | ||||| | Sbjct 4836965 AGTCCACCCAGGCCT-GGCTCTGCCCACCTACAACAACCACCTCTACTAACAAAT---TA 4837020 Query 3009 GTGAAACTGCAGGTAGTACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGT 3068 | |||| | ||| | ||| ||||| ||||| || |||||||||||| ||| | Sbjct 4837021 CTCAAACCTC---TAGCAACAATGACAAAGAGTACTTTGGATACAGCACCCCC-GGGAAT 4837076 Query 3069 ATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACGTGACTGGCAGCGACTCATCA 3128 | ||||||||||| | |||||||| |||||||| || | ||||||||||||| ||||| Sbjct 4837077 ACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCA 4837136 Query 3129 ACAACAACTGGGGATTCCGGCCCAAGAAGCTGCGGTTCAAGCTCTTCAACATCCAGGTCA 3188 |||||||| ||| ||| | ||||| || | || |||| ||||||| || |||| Sbjct 4837137 ACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGC---TCAACATTCAAGTCA 4837193 Query 3189 AGGAGGTCACGACGAATGACGGCGTTACGACCATCGCTAATAACCTTACCAGCACGATTC 3248 | ||||||| ||| | ||| || | ||||||||| |||||||| || ||| || | Sbjct 4837194 AAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCC 4837253 Query 3249 AGGTATTCTCGGACTCGGAATACCAGCTGCCGTACGTCCTCGGCT-CTGCGCACCAGGGC 3307 |||| || |||||| || || ||| | ||| | | ||| | | ||| ||||| Sbjct 4837254 AGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC-TTAGCTGCTAGTACCCACAAGGGC 4837312 Query 3308 TGCCTGCCTCCGTTCCCGGCGGACGTCTTCATGATTCCTCAGTACGGCTACCTGACTCTC 3367 || || || || | || || || || ||| | ||||| || ||||| ||||||||| Sbjct 4837313 TGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATGGCTATCTGACTCTC 4837372 Query 3368 AACAATGGCAGTCAGTCTGTGG---GACGTTCC---TCCTTCTACTGCCTGGAGTACTTC 3421 || |||||| || | ||| || |||| ||||| | | | |||| || ||| Sbjct 4837373 AATGATGGCAACCAAGCACTGGAATGAGCTTCCTTTTCCTTTCATTACTTGGAATATTTC 4837432 Query 3422 CCCTCTCAGATGCTGAGAACGGGCAACAACTTTGAGTTCAGCTACAGCTTCGAGGACGTG 3481 || |||||||||| ||| ||| ||||||| ||| |||| || ||| ||| Sbjct 4837433 TCCAGTCAGATGCTGCAAACCAGCAGCAACTTTACCTTCTCATACATGTTTGAGAGTGTG 4837492 Query 3482 CCTTTCCACAGCAGCTA-CGCACACAGCCAGAGCCTGGACCGGCTGATGAATCCCCTCAT 3540 | ||||||||| || || || ||||||||| | | ||| || ||||||||| || Sbjct 4837493 CTCTTCCACAGCTCATATTGCCCATAGCCAGAGCATCAATTGGCAGAAGAATCCCCTGAT 4837552 Query 3541 CGACCAGTACTTGTACTACCTG 3562 || || || |||| || ||| Sbjct 4837553 TGATCAATATTTGTGGTATCTG 4837574 Score = 143 bits (158), Expect = 8e-31 Identities = 309/454 (68%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 2197 GAGCAATAAA-TGACTTAAACCAGGTATGGCTGCCGATGGTTATCTTCCAGATTGGCTCG 2255 || ||||||| | | ||||| || ||||||| |||||||| ||||| | ||| | | Sbjct 4836234 GAACAATAAAATTATTTAAAT-AGACATGGCTG---ATGGTTATTTTCCAAACTGGTTGG 4836289 Query 2256 AGGACAACCTCTCTGAGGGCATTCGCGAGTGGTGGGACCTGAAACCTGGAGCCCCGAAAC 2315 | | |||||| | | | |||||| || | || |||| || |||| Sbjct 4836290 AAATTATTCTCTCTTACAGGTTCTAAGAGTGGCAAAACTTAAAGTCTGGCCTGCCAAAAC 4836349 Query 2316 CCAAAGCCAACCAGCAAAAGCAGGACAACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGT 2375 | || ||||| ||||| | || ||| | | ||||| ||| | | || || || | Sbjct 4836350 CTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGGTATAAAT 4836409 Query 2376 ACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGG 2435 | ||| | || | |||| | || ||||| || |||||| ||||| ||| | | || | Sbjct 4836410 ATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTCT--GCTG 4836467 Query 2436 CCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGC 2495 | || |||||| |||||||||| || ||||||| || |||||| ||||| | ||| | Sbjct 4836468 CTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTCATACTTCA 4836526 Query 2496 GGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCATTTGGGG 2555 |||| |||||| || | ||| |||||||| || ||| | |||| || ||||||| Sbjct 4836527 GGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCT-CAACTACATACTTCTTTTGGGG 4836585 Query 2556 GCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGG 2615 |||| ||| ||| || |||||||| | ||| ||||| | || | | || |||| Sbjct 4836586 GCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TTGGCCTGG 4836644 Query 2616 TTGAGGAAGGCGCTAAGACGGCTCCTGCAAAGAA 2649 || | ||| | |||||||| ||||| ||||| Sbjct 4836645 TTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAA 4836678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14991508298910