Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq268 358 2e-95 >seq268 Length=5072910 Score = 358 bits (396), Expect = 2e-95 Identities = 530/743 (71%), Gaps = 25/743 (3%) Strand=Plus/Plus Query 2718 GGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCGCC 2777 ||| |||| |||||||| |||| ||| | |||||||||| || | ||| | || ||| Sbjct 4836835 GGATCTAAACCAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCC 4836894 Query 2778 GACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACAGA 2837 || | | | |||| ||| || |||||||||||||| |||||| ||| ||||| || || Sbjct 4836895 GATGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGA 4836954 Query 2838 GTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACAAG 2897 ||||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | Sbjct 4836955 ATCATCACCAAGTCCACCCAGGCCT-GGCTCTGCCCACCTACAACAACCACCTCTACTAA 4837013 Query 2898 CAAATCTC-CAACGGGACATCGGGAGGAGCCACCAACGACAACACCTACTTCGGCTACAG 2956 ||||| | ||| || || | || ||| ||||| ||||| || ||||| Sbjct 4837014 CAAATTACTCAA----ACCTCTAG------CAACAATGACAAAGAGTACTTTGGATACAG 4837063 Query 2957 CACCCCCTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTTTCACCACGTGACTG 3016 ||||||| ||| || ||||||||||| | |||||||| ||||| || || | ||||| Sbjct 4837064 CACCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTG 4837122 Query 3017 GCAGCGACTCATCAACAACAACTGGGGATTCCGGCCCAAGAGACTCAGCTTCAAGCTCTT 3076 |||||||| ||||||||||||| ||| ||| | ||||| | || | ||| |||| | Sbjct 4837123 GCAGCGACCCATCAACAACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGC---T 4837179 Query 3077 CAACATCCAGGTCAAGGAGGTCACGCAGAATGAAGGCACCAAGACCATCGCCAATAACCT 3136 |||||| || ||||| ||||||| | | || |||||| |||||||||||||||||| Sbjct 4837180 CAACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCT 4837239 Query 3137 CACCAGCACCATCCAGGTGTTTACGGACTCGGAGTACCAGCTGCCGTACGTTCTCGGCT- 3195 ||| |||||||||||||||| |||||| || || ||| | ||| || | ||| Sbjct 4837240 CACTTCCACCATCCAGGTGTTTGTGGACTCAGACTATCAGTTAGTATAC-TTAGCTGCTA 4837298 Query 3196 CTGCCCACCAGGGCTGCCTGCCTCCGTTCCCGGCGGACGTGTTCATGATTCCCCAGTACG 3255 | ||||| ||||||| || || || | || || || || ||| | || || || | Sbjct 4837299 GTACCCACAAGGGCTGTCTCTAGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATG 4837358 Query 3256 GCTACCTAACACTCAACAACGGTAGTCAGGCCGTGGGACG------CTCCTCCTTCTACT 3309 |||| || || ||||| | || | || || ||| | | || ||||| | | Sbjct 4837359 GCTATCTGACTCTCAATGATGGCAACCAAGCACTGGAATGAGCTTCCTTTTCCTTTCATT 4837418 Query 3310 GCCTGGAATACTTTCCTTCGCAGATGCTGAGAACCGGCAACAACTTCCAGTTTACTTACA 3369 | ||||||| || | ||||||||| |||| ||| |||||| || | |||| Sbjct 4837419 ACTTGGAATATTTCTCCAGTCAGATGCTGCAAACCAGCAGCAACTTTACCTTCTCATACA 4837478 Query 3370 CCTTCGAGGACGTGCCTTTCCACAGCAGCTA-CGCCCACAGCCAGAGCTTGGACCGGCTG 3428 || ||| |||| ||||||||| || ||||| ||||||||| | | ||| | Sbjct 4837479 TGTTTGAGAGTGTGCTCTTCCACAGCTCATATTGCCCATAGCCAGAGCATCAATTGGCAG 4837538 Query 3429 ATGAATCCTCTGATTGACCAGTA 3451 | |||||| |||||||| || || Sbjct 4837539 AAGAATCCCCTGATTGATCAATA 4837561 Score = 147 bits (162), Expect = 6e-32 Identities = 240/341 (70%), Gaps = 5/341 (1%) Strand=Plus/Plus Query 2208 CCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGC 2267 || || || || ||||| ||||| | || ||| | | ||||| ||| | | || Sbjct 4836343 CCAAAACCTAAGGCCAATCAGCAGCATCAAGACTTCTCATGTGGTCTTGTGTTGTCCGGG 4836402 Query 2268 TACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGAC 2327 || || || ||| | || | |||| | || ||||| || |||||| ||||| ||| | | Sbjct 4836403 TATAAATATCTCTGGCCATGCAACAGTCTTGACAAAGGAGAGCCCATCAACAAGGCAGTC 4836462 Query 2328 GCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTGCAGGCGGGTGACAATCCG 2387 || || || |||||| |||||||||| || ||||||| |||||||| ||||| | Sbjct 4836463 T--GCTGCTCTTGAGCACAGCAAGGCCTACAACAAGCAGCTTAAGGCGGGT-ACAATTCA 4836519 Query 2388 TACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGTCT 2447 ||| | |||| |||||| || | ||| |||||||| || ||| | |||| ||| Sbjct 4836520 TACTTCAGGTACAACCACAAGAACACTGAGCTTCAGGAGAAGCT-CAACTACATACTTCT 4836578 Query 2448 TTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTC 2507 ||||||||||| ||| ||| || |||||||| | ||| ||||| | || | | Sbjct 4836579 TTTGGGGGCAAACTCAACAAAGCTGTATTCCAGGCTGAAAAGAAAGTTCTTGCACAT-TT 4836637 Query 2508 GGTCTGGTTGAGGAAGGCGCTAAGACGGCTCCTGGAAAGAA 2548 || |||||| | ||| | |||||||| |||||| ||||| Sbjct 4836638 GGCCTGGTTTAACAAGCTGTTAAGACGGTTCCTGGCAAGAA 4836678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13942166702230