Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq268 223 1e-54 >seq268 Length=5072910 Score = 223 bits (246), Expect = 1e-54 Identities = 319/444 (72%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 2862 ATGGCTGAAGGAGGTGGCGGTCCAATGGGCGATGCAGGCCAAGGTGCCGACGGAGTGGGC 2921 |||||| ||| ||| | | |||||||| || | ||| |||||||| | | | || Sbjct 4836847 ATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAGGT 4836906 Query 2922 AATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTGGACAACGGAGTCGTTACCCGA 2981 ||||| || |||||||||||||| ||||||||||| |||| ||| || || | ||| Sbjct 4836907 AATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAATCATCACCAAG 4836966 Query 2982 ACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCACTTGTACAAGCGGATC---CAA 3038 |||| | ||||| || |||||| ||||||||||||| | ||| | | || ||| Sbjct 4836967 TCCACCCAGGCCTGGCTC-TGCCCACCTACAACAACCACCTCTACTAACAAATTACTCAA 4837025 Query 3039 GGACCGGGAGGAACCGACCCCAACAATAAATTCTTTGGATTCAGCACCCCCTGGGGGTAC 3098 ||| || ||| | || | || |||||||| |||||||||| ||| ||| Sbjct 4837026 --ACCTCTAGCAACAATGACAAAGAGTA----CTTTGGATACAGCACCCCC-GGGAATAC 4837078 Query 3099 TTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAGACTGGCAACGACTCATCAAC 3158 ||||||| || || |||||||| |||||||| || |||||||||| |||| ||||||| Sbjct 4837079 TTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCAAC 4837138 Query 3159 AACAACTGGGGCATCCGACCCAAAGCGATGCGCTTTAGACTCTTTAACATCCAGGTTAAA 3218 |||||| ||| | || |||||||| ||||| ||| ||||| || || ||| Sbjct 4837139 AACAACAGGGACTTCTGACCCAAAAAACAAAACTTTAAGCTC---AACATTCAAGTCAAA 4837195 Query 3219 GAAGTCACTGTCCAAGACTCCAACACCACCATCGCCAACAACCTCACCAGCACGGTCCAA 3278 || |||| ||||||| || || ||||||||||| |||||||| ||| |||| Sbjct 4837196 GAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCCAG 4837255 Query 3279 GTCTTTGCGGACAAGGACTACCAG 3302 || |||| |||| ||||| ||| Sbjct 4837256 GTGTTTGTGGACTCAGACTATCAG 4837279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14866739023695