Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq268 266 9e-68 >seq268 Length=5072910 Score = 266 bits (294), Expect = 9e-68 Identities = 385/535 (72%), Gaps = 14/535 (3%) Strand=Plus/Plus Query 2636 TGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAGGTGCCGATGGAGTGGGTA 2695 ||||| | |||||| | | |||| |||| || || || |||||||||| | | |||| Sbjct 4836848 TGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGATGAATTAGGTA 4836907 Query 2696 ATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACGGCGCTG--TCATCACCAA 2753 || | |||||||||||||||| |||||| || ||| | ||| |||||||||| Sbjct 4836908 ATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGG--GAAACTGAATCATCACCAA 4836965 Query 2754 GTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCTACCGCCAGATC---CA 2810 |||||||| ||||| | ||||| |||||||||||||||||||| || || || Sbjct 4836966 GTCCACCCAGGCCTGGCTC-TGCCCACCTACAACAACCACCTCTACTAACAAATTACTCA 4837024 Query 2811 GTCCAGCGGCACCGGAGACGGCACGTACTTTGGTTACAGCACGCCTTGGGGATACTTCGA 2870 || ||| | ||| ||||||||| |||||||| || ||| |||||| || Sbjct 4837025 AACCTCTAGCAACAATGACAAAGAGTACTTTGGATACAGCACCCCC-GGGAATACTTTGA 4837083 Query 2871 TTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGGCAGCGGCTCATCAACAACCA 2930 || ||||| |||||||| ||||| ||||| | ||||||||||| | |||||||||| | Sbjct 4837084 CTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGCAGCGACCCATCAACAACAA 4837143 Query 2931 CTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTCAACATCCAGGTCAAGGAGGT 2990 | ||| | || | ||||| | ||||||||||| ||||| || ||||| ||||| Sbjct 4837144 CAGGGACTTCTGACCCAAAAAACAAAACTTTAAGCTC---AACATTCAAGTCAAAGAGGT 4837200 Query 2991 CACGACGACCGACGGCACCACGACCATCGCCAACAACCTCACCAGCACCATACAGGTCTT 3050 || ||| ||| |||||| |||||||||||| |||||||| |||||| ||||| || Sbjct 4837201 CATGACCCAAGACAGCACCATGACCATCGCCAATAACCTCACTTCCACCATCCAGGTGTT 4837260 Query 3051 TGCGGACACGGAGTACCAGCTCCCGTACGT-GCTCGGCAACGCCCACGAGGGCTGCCTGC 3109 || |||| | || || ||| | ||| | ||| | | ||||| ||||||| || Sbjct 4837261 TGTGGACTCAGACTATCAGTTAGTATACTTAGCT-GCTAGTACCCACAAGGGCTGTCTCT 4837319 Query 3110 CGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTACGCGTACCTGACGCTCAA 3164 ||| || | || || || || ||| | || || || | || ||||| ||||| Sbjct 4837320 AGCCTTTTCTGGATGAAGTTTTTATGGTACCTCAATATGGCTATCTGACTCTCAA 4837374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13599850998435