Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq73 89.7 2e-14 >seq73 Length=12356756 Score = 89.7 bits (98), Expect = 2e-14 Identities = 195/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 1314 AAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTC-TT 1372 ||||||||||||||| ||| | ||| ||||| | || | || |||| ||| || | Sbjct 9408567 AAACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAG-TAAGTCAGT 9408510 Query 1373 TCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAAT 1432 | || | || || ||| |||| |||| || || |||| | ||||| ||| Sbjct 9408509 TTAAGGAAATTATATCTGG----GCAAGCAGAATTATCCCAAAAAGAAAAGGATCTAAAA 9408454 Query 1433 CAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTG 1492 ||||||| |||||||| ||||| |||||||| |||||| || || || | | | || Sbjct 9408453 CAATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAATG 9408394 Query 1493 GCACAGAACTCAAAACAGAACACAGACAACCAATAATGGATAGATGCTTAAGAATTGA-A 1551 | ||||| | | |||| |||| |||| |||| | |||||||| || |||| | | Sbjct 9408393 GATGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGATG--TATTAATTTATA 9408337 Query 1552 C-TCAAAAACAAACTAAGTGGTGATCATGGCTTGTTAGAAGAT 1593 | | ||| | || || ||||||| ||| ||| |||| ||| Sbjct 9408336 CATGAAAGAAAAGTTAGGTGGTGAATTTGGTTTGATAGATGAT 9408294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15029898845130