Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq73 120 9e-24 seq132 114 4e-22 >seq73 Length=12356756 Score = 120 bits (132), Expect = 9e-24 Identities = 212/302 (70%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 1380 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTT 1439 |||||||||||||| ||| | ||| ||||| |||| ||||| ||||||| || ||| Sbjct 9408566 AACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAGTTT 9408508 Query 1440 AAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC 1499 || | ||| || ||| ||||| ||| | || |||| | ||||| ||||| Sbjct 9408507 AAGGAAATTATATCTGGGCAAGC----AGAATTATCCCAAAAAGAAAAGGATCTAAAACA 9408452 Query 1500 ATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGG 1559 || || |||||||| || || |||||||| |||||| || ||| | || || Sbjct 9408451 ATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAATGGA 9408392 Query 1560 TCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATGTATTCGTGTACATCTG 1619 | |||||| |||||||| || | |||| |||||| || ||||||||| | || | || Sbjct 9408391 TGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGATGTATTAATTTATACATG 9408333 Query 1620 ACCACAAGACTT-CCTGGCGACTTTGGTTTACTTGATGATGAAGAGATACC-AACTATTT 1677 | | || | || ||| || |||||||| | |||||| ||||| || |||| ||| Sbjct 9408332 A-AAGAAAAGTTAGGTGGTGAATTTGGTTTGATAGATGATTCAGAGACCCCAAACTTTTT 9408274 Query 1678 TT 1679 || Sbjct 9408273 TT 9408272 Score = 86.0 bits (94), Expect = 2e-13 Identities = 126/179 (70%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 1204 TATTTCATGCAATGATGTGCTGTCTAAACAAA----------CAAATGGGCAAAAGAAAC 1253 || ||||| |||| ||||||||| |||| ||| || | ||| ||| ||| Sbjct 9408907 TAATTCATTCAATTATGTGCTGTTTAAATAAAACAGCCCACACACAAGGGGAAA-GAAGT 9408849 Query 1254 ACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCT 1313 | || || || ||| | || |||||| |||||| || |||| ||| |||||||| Sbjct 9408848 ATTATTTTGTTTCATGGACAAGAAAGTACAGGAAAATCTCTCATAGAACATAAAATTGCA 9408789 Query 1314 CAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGA 1372 ||||| ||||||||| || | ||| ||| || | ||| | ||||||||||| || || Sbjct 9408788 CAATTTATTGGTAATGCTGGTTACTATAATGCAGGAAATATGAACTTTCCATTTAATGA 9408730 >seq132 Length=8627105 Score = 114 bits (126), Expect = 4e-22 Identities = 197/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 1399 TAGAAGAAGCAGGAAACTTTGGA-ACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGC 1457 |||||||||| ||| | |||||| | | | |||| ||||||||| || | || Sbjct 918410 TAGAAGAAGCTGGACATTTTGGACAGTGACTTAAAGCAATTTAAACAGATTACATCTGAA 918351 Query 1458 CAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTT 1517 ||| || | ||| | || |||||||| ||||| || ||||| || ||| ||| |||||| Sbjct 918350 CAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGTA 918291 Query 1518 ATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGAACTTAGACCAGAA 1577 || |||||||| || ||||| |||||| | || || || | |||| | ||||| ||| Sbjct 918290 ATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTGAA 918231 Query 1578 CATAAACAACCAATCATGGACAGATGTATTCGTGTACATCTGACCACAAGACTTCCTGGC 1637 ||||| ||| | || |||| | | || | | || | | || | | | ||| Sbjct 918230 CATAATCAATTGAAGAT----AGATATGCTAGTTTTTA-CTTA--ATAAAATTACATGGT 918178 Query 1638 GACTTTGGTTTACTTGATGATGAAGAGATACCAACTATTTTT 1679 ||||||||||| | ||| |||| || |||||| | ||||| Sbjct 918177 GACTTTGGTTTCTTGGATAATGATGAAATACCAGATTTTTTT 918136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14645993382930