Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq268 147 6e-32 >seq268 Length=5072910 Score = 147 bits (162), Expect = 6e-32 Identities = 306/447 (68%), Gaps = 18/447 (4%) Strand=Plus/Plus Query 2655 ATCAAATACAATGGCTCAAGGAGGTGGCGGACCAATGGCAGACGATAACCAAGGCGCCGA 2714 ||| || |||||||| ||| ||| | | |||||||| || || ||||| || ||||| Sbjct 4836837 ATCTAAACCAATGGCTTCAGGTGGTAGGGCACCAATGGGTGAAGACAACCAGGGTGCCGA 4836896 Query 2715 GGGAGTGGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGT 2774 | | | |||||| | || ||| |||||||||| ||| ||||||| ||||| || | Sbjct 4836897 TGAATTAGGTAATTCTTCAGGAAATTGGCATTGTGATTCCCAATGACTGGGAAACTGAAT 4836956 Query 2775 CATTACAAAATCTACC-AGAACTTGGGTTCTGCCCTCTTACGGGAATCATCTCTACTCGC 2833 ||| || || || ||| || || || ||||||| | ||| || || ||||||| Sbjct 4836957 CATCACCAAGTCCACCCAGGCCT--GGCTCTGCCCACCTACAACAACCACCTCTACT--- 4837011 Query 2834 CCATCAACTTTGATGGAACCACAGGGAACGGAACCCAAGCCGCTTACTGCGGATACGCTA 2893 | ||| || | |||| | | ||| | ||| |||| |||||| | Sbjct 4837012 --AACAAATTAC-TCAAACCTCTAGCAACAATGACAAAGAG---TACTTTGGATACAGCA 4837065 Query 2894 CCCCCTGGGCCTACTTTGACTTTAACCGATTCCACTGCCACTTTTCCCCCCGAGACTGGC 2953 ||||| ||| |||||||||||||| || |||||||| ||||| || || ||||||||| Sbjct 4837066 CCCCC-GGGAATACTTTGACTTTAATCGCTTCCACTGACACTTCTCTCCTTGAGACTGGC 4837124 Query 2954 AAAGACTCATTAACAACCATACCGGAATAC-GACCAGTCGGACTCAAATTCAAGCTGTTC 3012 | ||| ||| |||||| | | ||| | | |||| || || || |||| || Sbjct 4837125 AGCGACCCATCAACAACAACA-GGGACTTCTGACCCAAAAAACAAAACTTTAAGC---TC 4837180 Query 3013 AACATCCAGGTCAAGGAAATCACAGTACAAGATTCGACCAAAACGATCGCCAACAATCTC 3072 ||||| || ||||| || ||| ||||| |||| || |||||||| || ||| Sbjct 4837181 AACATTCAAGTCAAAGAGGTCATGACCCAAGACAGCACCATGACCATCGCCAATAACCTC 4837240 Query 3073 ACCAGCACCGTACAGGTCTTTGCGGAC 3099 || |||| | ||||| |||| |||| Sbjct 4837241 ACTTCCACCATCCAGGTGTTTGTGGAC 4837267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14572411502675