Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq73 95.1 4e-16 seq132 86.0 2e-13 >seq73 Length=12356756 Score = 95.1 bits (104), Expect = 4e-16 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 1488 AACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTC 1547 |||||||||||||| ||| | ||| ||||| |||| ||||| ||||||| || || Sbjct 9408566 AACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAGTTT 9408508 Query 1548 AAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAACC 1607 || | ||| || ||| ||| |||| | || |||| | ||||| ||||| Sbjct 9408507 AAGGAAATTATATCTGG----GCAAGCAGAATTATCCCAAAAAGAAAAGGATCTAAAACA 9408452 Query 1608 ATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACT-AAGGTCGTGGTAGG 1666 || || |||||||| ||||| ||||| || |||||| || ||| || | | | || Sbjct 9408451 ATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAAT-GG 9408393 Query 1667 GTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGTAT 1714 | ||||| ||||| || |||| |||| |||||| || |||||||| Sbjct 9408392 ATGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGATGTAT 9408346 Score = 77.0 bits (84), Expect = 1e-10 Identities = 124/179 (69%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 1312 TATTTCATGCAATTATGTGCTGTCTAAACAAA----------CAGATGGGAAAAAGAAAC 1361 || ||||| |||||||||||||| |||| ||| || | ||| ||| ||| Sbjct 9408907 TAATTCATTCAATTATGTGCTGTTTAAATAAAACAGCCCACACACAAGGGGAAA-GAAGT 9408849 Query 1362 ACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAATAGCT 1421 | ||| | || ||| | || ||||||||||||| | ||| ||| ||||| || Sbjct 9408848 ATTATTTTGTTTCATGGACAAGAAAGTACAGGAAAATCTCTCATAGAACATAAAATTGCA 9408789 Query 1422 CAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAATGA 1480 || || |||| |||| |||| ||| || || | ||| | ||||||||||| ||||| Sbjct 9408788 CAATTTATTGGTAATGCTGGTTACTATAATGCAGGAAATATGAACTTTCCATTTAATGA 9408730 >seq132 Length=8627105 Score = 86.0 bits (94), Expect = 2e-13 Identities = 133/189 (70%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 1507 TAGAAGAAGCAGGAAACTTTGGA-ACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGT 1565 |||||||||| ||| | |||||| | | | |||| ||||| ||| || | || Sbjct 918410 TAGAAGAAGCTGGACATTTTGGACAGTGACTTAAAGCAATTTAAACAGATTACATCTGAA 918351 Query 1566 CAATCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTA 1625 ||| || | ||| | || |||||||| ||||| || ||||| || ||| ||| ||||||| Sbjct 918350 CAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGTA 918291 Query 1626 ATTATGACCACAAATGAAGACATTACTAAGGTCGTGGTAGGGTCAGAACTTAGACCTGAA 1685 || ||||| || || ||||| || || | || || | ||| | ||||||||| Sbjct 918290 ATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTGAA 918231 Query 1686 CACAAACAA 1694 || || ||| Sbjct 918230 CATAATCAA 918222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14713176838815