Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq132 107 6e-20 seq73 95.1 4e-16 >seq132 Length=8627105 Score = 107 bits (118), Expect = 6e-20 Identities = 195/277 (70%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 1363 GTAGAAGAAGCTGGCAACTTTGGAG-GCCAAGTAAACCAATTCAAAACAATCATGAGTGG 1421 |||||||||||||| | |||||| | | |||| ||||| ||| || | || Sbjct 918411 GTAGAAGAAGCTGGACATTTTGGACAGTGACTTAAAGCAATTTAAACAGATTACATCTGA 918352 Query 1422 CCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGT 1481 ||| || | ||| |||| |||||||| ||||| |||||| || || ||| |||||| Sbjct 918351 ACAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAGT 918292 Query 1482 CATAATGACTACAAATGAAGACATAACCA-AAGTAATGATAGGATGTGAACTCAAACCAG 1540 || ||||| || || ||||| ||||| || ||| | | ||||||||| | | ||| | Sbjct 918291 AATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTT-GGATGTGAAATAAGACCTG 918233 Query 1541 AACACAAACAACCTATAATGGACAGATGTGTAAGAATAGAACTCaaaaaaaGACTACAAG 1600 |||| || ||| | || || |||| || || | | || || |||| |||| | Sbjct 918232 AACATAATCAA--TTGAA--GATAGATATGCTAGTTTTTA-CTTAATAAAAT--TACATG 918180 Query 1601 GTGACTTTGGTTTGCTTGAAGATGGTGAAATCCCAGA 1637 ||||||||||||| | || ||| |||||| ||||| Sbjct 918179 GTGACTTTGGTTTCTTGGATAATGATGAAATACCAGA 918143 >seq73 Length=12356756 Score = 95.1 bits (104), Expect = 4e-16 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1345 AACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTC 1404 |||||||| |||| ||||| ||| |||| | || ||||| ||||||| || || Sbjct 9408566 AACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAGTTT 9408508 Query 1405 AAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAA 1464 || ||| || ||| ||| || || || || |||| ||||||| |||| | Sbjct 9408507 AAGGAAATTATATCTGGGCAAGCA----GAATTATCCCAAAAAGAAAAGGATCTAAAACA 9408452 Query 1465 ATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGA 1524 || | |||||||| || || ||||| || |||||| || ||| || | | | ||| Sbjct 9408451 ATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAATGGA 9408392 Query 1525 TGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGTAAGAATAGAACTC 1584 |||||||| | |||||| |||| |||| | || | || |||||| | | || | | Sbjct 9408391 TGTGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGATGTATTAATTTATACATG 9408333 Query 1585 aaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGAT 1623 ||| ||| || ||||| ||||||||| | || ||| Sbjct 9408332 AAAGAAAAGTTAGGTGGTGAATTTGGTTTGATAGATGAT 9408294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15132273635050