Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq73 114 4e-22 seq132 109 2e-20 >seq73 Length=12356756 Score = 114 bits (126), Expect = 4e-22 Identities = 195/275 (71%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 1438 AACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTT 1497 |||||||||||||| ||||| ||| |||| | || |||||| | ||||||| || ||| Sbjct 9408566 AACAAAAACCTAATTTGGGTTGAA-AAGCAAGAAATTTTGGTCTGCAAGTAAGTCAGTTT 9408508 Query 1498 AAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCA 1557 || | |||||| || ||||| |||| | || |||| | ||||| ||| || Sbjct 9408507 AAGGAAATTATATCTG----GGCAAGCAGAATTATCCCAAAAAGAAAAGGATCTAAAACA 9408452 Query 1558 ATTGAACCAACTCCAGTCATTATGACTACTAATGAA---GATA-TCACAAGAGTCATGGT 1613 ||||| |||||||| || || ||||| ||||||||| || | | | | || |||| Sbjct 9408451 ATTGAGCCAACTCCTGTAATGATGACAACTAATGAAAACGAAACTGAAATTAGAAATGGA 9408392 Query 1614 TGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGTCAGAATCTA 1673 || |||||| | |||||| |||| |||| | |||| || |||||| | | | || Sbjct 9408391 TG----TGAACTGAGACCAGACCACACACAA-CAATCAGAGATAGATGTATTAATTTATA 9408337 Query 1674 TCT-AAACAATAGACTAAATGGTGACTTTGGTTTG 1707 | ||| || || || |||||| ||||||||| Sbjct 9408336 CATGAAAGAAAAG-TTAGGTGGTGAATTTGGTTTG 9408303 Score = 80.6 bits (88), Expect = 8e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1326 TGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAA 1385 ||||| | ||||||||| ||| || ||| ||| |||| ||| || | ||||||| Sbjct 9408834 TGGACAAGAAAGTACAGGAAAATCTCTCATAGAACATAAAATTGCACAATTTATTGGTAA 9408775 Query 1386 TGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACT 1432 || ||| | ||||||||||| |||| ||||||||||| ||||||| Sbjct 9408774 TGCTGGTTACTATAATGCAGGAAATATGAACTTTCCATTTAATGACT 9408728 >seq132 Length=8627105 Score = 109 bits (120), Expect = 2e-20 Identities = 191/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 1456 GTAGAAGAAGCTGGTAACTTTGGT--GTACAAGTAAACCAATTTAAAGCAATTATGAGTG 1513 |||||||||||||| | ||||| || | |||| ||||||||| |||| || Sbjct 918411 GTAGAAGAAGCTGGACATTTTGGACAGTG-ACTTAAAGCAATTTAAACAGATTACATCTG 918353 Query 1514 GCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAG 1573 || || | ||| | || |||||||| ||||| || ||| | |||||| ||| ||||| Sbjct 918352 AACAAACATTGAGAATTGATCAAAAAGGTAAAGGAAGTAAAACTATTGAATCAATTCCAG 918293 Query 1574 TCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTAAAACCAG 1633 | || ||||| ||||| |||||||| ||| | | | ||||| | |||| ||| ||| | Sbjct 918292 TAATGATGACAACTAAAGAAGATATAACAGCAATTAAAGTTGGATGTGAAATAAGACCTG 918233 Query 1634 AACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAATAGACTAAATG 1693 |||| || ||| | || |||| || || | || ||| || | || ||| Sbjct 918232 AACATAATCAATTGAAGAT----AGATATGCTAGTTTTTACTTAATAAA---ATTACATG 918180 Query 1694 GTGACTTTGGTTTGCTTGAACACAATGAAATTCCA 1728 ||||||||||||| | || | ||||||| ||| Sbjct 918179 GTGACTTTGGTTTCTTGGATAATGATGAAATACCA 918145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14729172899740