Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq3673 345 1e-91 seq519 174 5e-40 >seq3673 Length=216134 Score = 345 bits (382), Expect = 1e-91 Identities = 525/741 (71%), Gaps = 15/741 (2%) Strand=Plus/Minus Query 990 TACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACCTCGGAGAAGCAGTGGATC 1049 ||||||| ||||| | ||| | ||| | || ||| | || || ||||||| |||||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGGTGACTTCCAAGAAGCAATGGATC 107480 Query 1050 CAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCCAACTCGCGGTCCCAAATC 1109 |||||| || | | |||||| |||||| |||||| || | | || | || | || Sbjct 107479 CAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGATA 107420 Query 1110 AAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACTAAAACCGCCCCCGACTAC 1169 || |||||| ||||| | | ||||| ||| ||||| || || ||| | |||||| Sbjct 107419 CAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACTAC 107360 Query 1170 CTGGTGGGCCAGCAGCCCGTGGAGGACATTTCCAGCAATCGGATTTATAAAATTTTGGAA 1229 ||| | || ||| ||| | ||||||||| || | || | | || || Sbjct 107359 CTGAT-------CACCCCCTGGCG-ACATTTCCACTAACCACATCCACCAGATCTTTAGC 107308 Query 1230 CTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCTGGGATGG-GCCACGAAAAA 1288 || || || |||||||| || ||| || ||| | || ||||| | || || ||| Sbjct 107307 CTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTCAGATGGTGTCA-GAGAAA 107250 Query 1289 GTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACTACCGGGAAGACCAACAT 1348 ||| || ||| ||||||||||||| |||| | | || | ||| || || |||||||| Sbjct 107249 GTTTGGGAAGTGGAACACCATCTGACTGTCCTGCTC-GCCATTACTGGAAAAACCAACAT 107191 Query 1349 CGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGACCAATGAGAA 1408 || |||||||| | || |||| || ||||||| ||| | |||||| |||| |||| Sbjct 107190 GGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGAA 107131 Query 1409 CTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGGGGAAGATGAC 1468 ||| ||||||| |||||| || |||||| ||||| | ||||||||||| || || ||||| Sbjct 107130 CTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGAC 107071 Query 1469 CGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGCGCGTGGACCA 1528 | ||||| |||||||||||||| |||||||| || ||| | | | |||| | Sbjct 107070 C---AAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCTG 107014 Query 1529 GAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCTCCAACACCAA 1588 || || ||| || |||||| || | |||| || ||| |||||||||||||||| Sbjct 107013 AAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCAA 106954 Query 1589 CATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGCCGTTGCAAGA 1648 ||||||| || || ||||||||| || ||||| |||||| | ||| ||| |||| Sbjct 106953 CATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAGA 106894 Query 1649 CCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGACTTTGGGAAGGTCACCAA 1708 ||| ||||||||||| |||| || ||||| | |||| || ||||| || || Sbjct 106893 CCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACAAA 106834 Query 1709 GCAGGAAGTCAAAGACTTTTT 1729 || |||||||||||||||| Sbjct 106833 AGAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 174 bits (192), Expect = 5e-40 Identities = 179/232 (77%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 2795 TGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAATGGCAGACAATAACGAGGGCG 2854 ||||| || |||||||||| |||| ||||| ||||| |||| ||||| ||| |||| | Sbjct 241661 TGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTG 241720 Query 2855 CCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCACATGGATGGGCGACA 2914 |||| ||||||| | |||||| || ||||||||||||||||||||| || |||| ||| Sbjct 241721 CCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACC 241780 Query 2915 GAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2974 |||||||||||| ||| | ||||||| ||||||| | |||| ||||||||||| Sbjct 241781 GAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTACA 241840 Query 2975 AACAAATTTCCAGCCAATCAGGAGCCTCGAACGACAATCACTACTTTGGCTA 3026 ||||| | |||| | ||| | || | | ||||| |||| ||| || || Sbjct 241841 AACAAGTCAACAGC--AGCAGCA-CCACCACCGACAGCCACTCCTTGGGGTA 241889 Score = 140 bits (154), Expect = 1e-29 Identities = 319/473 (67%), Gaps = 8/473 (2%) Strand=Plus/Minus Query 3982 GATGTCAACACACAAGGCGTTCTTCCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTT 4041 ||| ||||| || ||| || | || |||||||| |||| |||||| ||| | ||| Sbjct 240512 GATATCAACCACCAGGGCATTTTGCCTGGCATGGTACGGCAAGACAGACGTGTCT--CTT 240455 Query 4042 CAGGGGCCCATCTGGGCAAAGATTCCACACACGGACGGACATTTTCACCCCTCTCCCCTC 4101 | ||| ||||||||| | || ||||| | | ||| | ||| |||||| | | || || Sbjct 240454 CGGGGCCCCATCTGGCCCAAAGTTCCAGAAAGGGATGAACACTTTCACTCGTTGCCACTT 240395 Query 4102 ATGGGTGGATTCGGACTTAAACACCCTCCTCCACAGATTCTCATCAAGAAC-ACCCCGGT 4160 |||| |||||| || || || || ||||| || ||||| | || || || | || Sbjct 240394 ATGG-TGGATTTGGCCTCAAGAGCCTGCCTCCCCAAATTCTTGTAAAAAAATACATCAGT 240336 Query 4161 ACCTGCGAATCCTTCGACCACCTTCAGTGCGGCAAAGTTTGCTTCCTTCATCACACAGTA 4220 || | || || | || |||| ||| || ||||| || | || ||||| || Sbjct 240335 TCCCGGAAACCCCCCAACAGCCTTTGACATGGCTAAATTTGCCTCTT--ATTACACAATA 240278 Query 4221 CTCCACGGGACAGGTCAGCGTGGAGATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAACG 4280 || | |||||||| || | || || | |||||||| | ||||| | |||| | Sbjct 240277 TTCAATTGGACAGGTAAGTATAGAAATAGGATGGGAGCTACGAAAGGAGATGTCCAAAAG 240218 Query 4281 CTGGAATCCCGAAATTCAGTACACTTCCAACTACAACAAGTCTGTTAATGTGGACTTTAC 4340 |||| || |||| | ||||||| ||||||| || || | ||| ||| ||| | Sbjct 240217 GCGGAACCCGGAAACTGAGTACACCAGAAACTACACCAGACCTACTGATGGGGATTTTGC 240158 Query 4341 TGTGGACACTAATGGCGTGTATTCAGAGCCTCGCCCCATTGGCACCAGATACCTGACTCG 4400 |||||| | ||| | ||||||||||| || | ||||| ||| | || |||| | Sbjct 240157 AGTGGACGTCCACGGCATTTATTCAGAGCCCCGGTCTATTGGAACCCGGTATCTGAACAG 240098 Query 4401 TAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAAC 4453 ||||||| ||||| ||||| |||| | ||||| |||||||| ||| Sbjct 240097 ACCATTGTAATT-ATTGTTCCTCAAT-AACCCATGAATTCCTTTCAGTTAAAC 240047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14850122097240