Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq519 107 6e-20 seq3673 98.7 3e-17 >seq519 Length=1696111 Score = 107 bits (118), Expect = 6e-20 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 3074 GGGTGCCGATGGAGTGGGTAATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGG 3133 ||||||||||||||||| | | |||| || |||||||||||||||||| | || |||| Sbjct 241716 GGGTGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGG 241775 Query 3134 AAACACAGTCATCACAAAGACCACCAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3193 | || ||||||||| ||| | ||| | |||||||| |||| | | |||| |||| | Sbjct 241776 AGACCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCT 241835 Query 3194 CTACAAA 3200 ||||||| Sbjct 241836 CTACAAA 241842 >seq3673 Length=216134 Score = 98.7 bits (108), Expect = 3e-17 Identities = 133/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 1548 GCCACCACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGC 1607 |||| || || || |||||||| || || || || | |||||||| || |||| || Sbjct 107213 GCCATTACTGGAAAAACCAACATGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGA 107154 Query 1608 TGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATT 1667 || |||||||| | || ||||||| || || | || || || || || || || | Sbjct 107153 TGCATTAACTGGCCCAACAAGAACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTG 107094 Query 1668 TGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGA 1727 ||||||||||| ||||||||||| ||||| || || || || || || ||| |||| Sbjct 107093 TGGTGGGAGGAAGGAAAAATGAC---CAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGT 107037 Query 1728 GGGTC 1732 || || Sbjct 107036 GGATC 107032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16215540300410