Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq3673 333 8e-88 seq519 181 3e-42 >seq3673 Length=216134 Score = 333 bits (368), Expect = 8e-88 Identities = 520/740 (70%), Gaps = 13/740 (2%) Strand=Plus/Minus Query 987 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATT 1046 ||||||| ||||| | ||| ||||| | |||| | || || | ||||||||||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGGTGACTTCCAAGAAGCAATGGATC 107480 Query 1047 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1106 |||||| || | | ||| || |||||| ||| || || | | || | || |||| Sbjct 107479 CAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGATA 107420 Query 1107 AAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTAC 1166 || || | ||||| ||| |||||||||| ||||| ||||| || | |||||| Sbjct 107419 CAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACTAC 107360 Query 1167 CTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTGGAG 1226 ||| | |||| | || | ||||| ||| || | ||| |||| ||| | Sbjct 107359 CTGATC-------ACCCCCTGGCG-ACATTTCCACTAACCACATCCACCAGATCTTTAGC 107308 Query 1227 CTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAG 1286 ||||| || ||||||| ||| |||||| ||| |||| | ||| || | ||| Sbjct 107307 CTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTCAGATGGTGTCAGAGAAAG 107249 Query 1287 TTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATC 1346 || |||||| ||||||||||||| || | | || ||| || || ||||||||||| Sbjct 107248 TTTGGGAAGTGGAACACCATCTGACTGTCCTGCTCG-CCATTACTGGAAAAACCAACATG 107190 Query 1347 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAAC 1406 || || ||||||| || || || || ||||||| ||| | |||||| |||| ||||| Sbjct 107189 GCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGAAC 107130 Query 1407 TTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1466 || ||||||| ||| ||||| |||||| ||||| | ||||||||||| || || |||| Sbjct 107129 TTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA-- 107072 Query 1467 GCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAA 1526 ||||||| |||||| ||||||||||||||||| ||| | | | |||| | | Sbjct 107071 -CCAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCTGA 107013 Query 1527 AAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACACCAAC 1586 || || ||| || ||||||| | |||||| || ||| ||||||||||||||||| Sbjct 107012 AACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCAAC 106953 Query 1587 ATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAGGAC 1646 |||||| || || |||||||||||||| ||||| || || | ||| || | ||| Sbjct 106952 ATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAGAC 106893 Query 1647 CGGATGTTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCACCAAA 1706 || ||||| |||| |||| || |||| | |||| || ||||| || ||| Sbjct 106892 CGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACAAAA 106833 Query 1707 CAGGAAGTAAAGGACTTTTT 1726 || |||| || |||||||| Sbjct 106832 GAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 181 bits (200), Expect = 3e-42 Identities = 182/234 (78%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 2799 TTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGAGGG 2858 ||||||| || ||| ||||||||||| |||||| ||||| |||| ||||| ||| |||| Sbjct 241659 TTTGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGG 241718 Query 2859 TGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGGCGA 2918 |||||||||||||| | ||||||||| |||||||||||||||||| | || |||| || Sbjct 241719 TGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGA 241778 Query 2919 CAGAGTCATCACCACCAGCACCAGAACCTGGGCCCTGCCCACTTACAACAACCATCTCTA 2978 | |||||||||||| ||| | ||||||| ||||||| | |||| ||| ||||| Sbjct 241779 CCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTA 241838 Query 2979 CAAGCAAATCTCCAGCCAATCAGGAGCTTCAAACGACAACCACTACTTTGGCTA 3032 ||| ||| || |||| | ||| | | | | ||||| ||||| ||| || || Sbjct 241839 CAAACAAGTCAACAGC--AGCAGCA-CCACCACCGACAGCCACTCCTTGGGGTA 241889 Score = 149 bits (164), Expect = 2e-32 Identities = 321/470 (68%), Gaps = 10/470 (2%) Strand=Plus/Minus Query 3995 TCAATCATCAGGGGGCCTTACCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAG 4054 |||| || ||||| || ||||||||||| ||||||| | |||||| |||| | Sbjct 240508 TCAACCACCAGGGCATTTTGCCTGGCATGGTACGGCAAGACAG--ACGTGTCTCTTCGGG 240451 Query 4055 GACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGG 4114 | || |||||| | || |||| | | ||||| ||||||||| | | || || |||| Sbjct 240450 GCCCCATCTGGCCCAAAGTTCCAGAAAGGGATGAACACTTTCACTCGTTGCCACTTATGG 240391 Query 4115 GAGGCTTTGGACTGAAACATCCGCCTCCTCAAAT-CATGATCAAAAATACTCCGGTACCG 4173 || ||||| || || | |||||| ||||| | || |||||||| | || || Sbjct 240390 T-GGATTTGGCCTCAAGAGCCTGCCTCCCCAAATTCTTGTAAAAAAATACATCAGTTCCC 240332 Query 4174 GCAAATCCTCCGAC-GACTTTCAGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTC 4232 | ||| || || || | |||| | | ||| || ||||| || |||| || || || || Sbjct 240331 GGAAACCCCCCAACAGCCTTTGA-CATGGCTAAATTTGCCTC--TTATTACACAATATTC 240275 Query 4233 CACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAAGAAAACAGCAAACGTTG 4292 | ||||||||| || | ||||| | |||||||||| || || | |||| | | Sbjct 240274 AATTGGACAGGTAAGTATAGAAATAGGATGGGAGCTACGAAAGGAGATGTCCAAAAGGCG 240215 Query 4293 GAATCCAGAGATTCAGTACACTTCCAACTACAACAAGTCTGTTAATGTGGACTTTACTGT 4352 ||| || || | | ||||||| ||||||| || || | ||| ||| ||| | || Sbjct 240214 GAACCCGGAAACTGAGTACACCAGAAACTACACCAGACCTACTGATGGGGATTTTGCAGT 240155 Query 4353 AGACACTAATGGTGTTTATAGTGAACCTCGCCCTATTGGAACCCGGTATCTCACACGAAA 4412 ||| | || ||||| || || || ||||||||||||||||||| | || Sbjct 240154 GGACGTCCACGGCATTTATTCAGAGCCCCGGTCTATTGGAACCCGGTATCTGAACAGACC 240095 Query 4413 CTTGTGAATCCTGGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAAC 4462 |||| ||| | ||| ||||| |||| | ||||| |||||||| ||| Sbjct 240094 ATTGT-AATTATTGTTCCTCAAT-AACCCATGAATTCCTTTCAGTTAAAC 240047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15000414030610