Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq3673 329 1e-86 seq519 91.5 4e-15 >seq3673 Length=216134 Score = 329 bits (364), Expect = 1e-86 Identities = 522/744 (70%), Gaps = 21/744 (3%) Strand=Plus/Minus Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100 ||||||| ||||| | ||| ||||| | |||| | || || | |||||||||||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGGTGACTTCCAAGAAGCAATGGATC 107480 Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATC 1160 |||||| || | | || || |||||| ||| || || | | || | ||| | || Sbjct 107479 CAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGATA 107420 Query 1161 AAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTAC 1220 || || | ||||| ||| ||| |||||| ||||| ||||| || | |||||| Sbjct 107419 CAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACTAC 107360 Query 1221 CTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAG 1280 ||| | |||| | || | ||||||||| |||| |||| ||| ||| | Sbjct 107359 CTGATC-------ACCCCCTGGCG-ACATTTCCACTAACCACATCCACCAGATCTTTAGC 107308 Query 1281 ATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAG 1340 |||| || ||||||| ||| |||||| ||| |||| | ||| || | ||| Sbjct 107307 CTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTCAGATGGTGTCAGAGAAAG 107249 Query 1341 TTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATC 1400 || |||||| ||||||||||||| || | | || ||| || || ||||||||||| Sbjct 107248 TTTGGGAAGTGGAACACCATCTGACTGTCCTGCTCG-CCATTACTGGAAAAACCAACATG 107190 Query 1401 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAAC 1460 || || ||||||| || || || || ||||||| ||| | |||||| |||| ||||| Sbjct 107189 GCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGAAC 107130 Query 1461 TTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1520 || || |||| ||| ||||| |||||| ||||| | ||||||||||| || || |||| Sbjct 107129 TTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA-- 107072 Query 1521 GCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCAA 1580 ||||||| || ||| ||||||||||| ||||| ||| | | | |||| | | Sbjct 107071 -CCAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCTGA 107013 Query 1581 AAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCAAC 1640 || || ||| || ||||||| || | |||| || ||| ||||||||||||||||| Sbjct 107012 AACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCAAC 106953 Query 1641 ATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGAC 1700 |||||| ||||||||||| ||| || ||||| || ||| ||| | | ||| Sbjct 106952 ATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAGAC 106893 Query 1701 CGGATGTTCAAGTTCGAGCT----CACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCAC 1756 || |||||||| ||| | || |||| ||||||| | |||| |||||||| || Sbjct 106892 CGCATGTTCAAATTCAAACTGGTGGTCCAA----CTGGAGCCCAACTTCGGCAAGGTGAC 106837 Query 1757 CAAGCAGGAAGTCAAAGACTTTTT 1780 || || |||||||||||||||| Sbjct 106836 AAAAGAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 91.5 bits (100), Expect = 4e-15 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2887 CAAGGTGCCGATGGAGTGGGTAATGCCTCGGGTGATTGGCATTGCGATTCCACCTGGTCT 2946 || |||||||||||||||| | | |||| || ||||||||||||||||||| ||| Sbjct 241714 CAGGGTGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTG 241773 Query 2947 GAGGGCCACGTCACGACCACCAGCACCAGAACCTGGGTCTTGCCCACCTACAACAACCAC 3006 | | || |||| |||| ||| | |||||||| |||||||| | |||| |||| Sbjct 241774 GGAGACCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCAC 241833 Query 3007 CTCTACAA 3014 |||||||| Sbjct 241834 CTCTACAA 241841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15131519759720