Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq3673 367 4e-98 seq519 143 8e-31 >seq3673 Length=216134 Score = 367 bits (406), Expect = 4e-98 Identities = 529/742 (71%), Gaps = 17/742 (2%) Strand=Plus/Minus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGAC--CGGGGCATCACCTCCGAGAAGCAGTGGA 1061 ||||||| ||||| | ||| ||||| | ||||| | || ||| ||||||| |||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGG--TGACTTCCAAGAAGCAATGGA 107482 Query 1062 TCCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCTTCCAACTCGCGGTCCCAGA 1121 |||||||| || | | ||| || |||||| ||| || | | | || | || ||| Sbjct 107481 TCCAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGA 107422 Query 1122 TCAAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACT 1181 | || || | ||||| || ||||||||||| |||||||||| | || | |||| Sbjct 107421 TACAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACT 107362 Query 1182 ACCTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGG 1241 ||||| | | || || | |||||| || |||| |||| ||| ||| | Sbjct 107361 ACCTGAT--------CACCCCCTGGCGACATTTCCACTAACCACATCCACCAGATCTTTA 107310 Query 1242 AGCTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAA 1301 ||||| || |||| || || ||| | ||| ||| | ||| | ||| |||| || Sbjct 107309 GCCTGAATGGTGACGATCCCGCTTACTG-GCCTCTGTCCTCCTCAGATGGTGTCAGAGAA 107251 Query 1302 GGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACA 1361 ||| |||||| | ||||||||||| |||| | || ||| || || || ||||||| Sbjct 107250 AGTTTGGGAAGTGGAACACCATCTGACTGTCCTGCTCG-CCATTACTGGAAAAACCAACA 107192 Query 1362 TCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1421 | || || ||||||| || || || || ||||||| ||| | |||||| |||| ||| Sbjct 107191 TGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGA 107132 Query 1422 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1481 |||| ||||||| || ||||| |||||| ||||| | ||||||||||| || || |||| Sbjct 107131 ACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA 107072 Query 1482 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1541 | |||||| |||||||| |||||||||||||| || || | | | |||| | Sbjct 107071 C---CAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCT 107015 Query 1542 AAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCA 1601 ||| || ||| ||| ||||||| || |||| | || ||| ||||||||||||||| Sbjct 107014 GAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCA 106955 Query 1602 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGG 1661 |||||||| || || |||||||||||||| ||||| || ||| | ||| ||| | | Sbjct 106954 ACATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAG 106895 Query 1662 ACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAAGGTGACAA 1721 |||| ||||||||||| |||| || ||||||| |||| ||||||||||||| Sbjct 106894 ACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACAA 106835 Query 1722 AGCAGGAAGTCAAAGAGTTCTT 1743 | || |||||||||| || || Sbjct 106834 AAGAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 143 bits (158), Expect = 8e-31 Identities = 311/455 (68%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 4026 TTACCTGGCATGGTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAA 4085 || ||||||||||| |||||| | |||||||| || | ||| ||||| ||| ||||| Sbjct 240491 TTGCCTGGCATGGTACGGCAAG--ACAGACGTGTCTCTTCGGGGCCCCATCTGGCCCAAA 240434 Query 4086 ATTCCTCACACAGATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAG 4145 |||| | | |||| |||||||||| ||| || ||||| || || ||||| |||||| Sbjct 240433 GTTCCAGAAAGGGATGAACACTTTCACTCGTTGCCACTTAT-GGTGGATTTGGCCTCAAG 240375 Query 4146 AACCCGCCTCCTCAGATCCTCAT-CAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGA 4204 | || |||||| || || || | ||||| || | ||||| | || || || | | Sbjct 240374 AGCCTGCCTCCCCAAATTCTTGTAAAAAAATACATCAGTTCCCGGAAACCCCCCAACAGC 240315 Query 4205 GTTT-TCA--GCTACAAAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAG 4261 ||| || ||| || ||||| || | || || ||||| || | ||||| || || Sbjct 240314 CTTTGACATGGCT---AAATTTGCCTC--TTATTACACAATATTCAATTGGACAGGTAAG 240260 Query 4262 TGTGGAAATTGAATGGGAGCTGCAGAAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCA 4321 | | ||||| | ||||||||| | || || | ||| | |||| || ||| | Sbjct 240259 TATAGAAATAGGATGGGAGCTACGAAAGGAGATGTCCAAAAGGCGGAACCCGGAAACTGA 240200 Query 4322 GTACACATCCAATTATGCAAAATCTGCCAACGTTGATTTTACTGTGGACAACAATGGACT 4381 |||||| || || | | | || | | | |||||| | |||||| | | || | Sbjct 240199 GTACACCAGAAACTACACCAGACCTACTGATGGGGATTTTGCAGTGGACGTCCACGGCAT 240140 Query 4382 TTATACTGAGCCTCGCCCCATTGGCACCCGTTACCTTACCCGTCCCCTGTAATTACGTGT 4441 |||| | ||||| || | ||||| ||||| || || | | | || |||||||| ||| Sbjct 240139 TTATTCAGAGCCCCGGTCTATTGGAACCCGGTATCTGAACAGACCATTGTAATTA-TTGT 240081 Query 4442 TAATCAATAAACCGGTTGATTCGTTTCAGTTGAAC 4476 | ||||| |||| | |||| |||||||| ||| Sbjct 240080 TCCTCAAT-AACCCATGAATTCCTTTCAGTTAAAC 240047 Score = 143 bits (158), Expect = 8e-31 Identities = 111/132 (84%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 2815 TGGGACCTACTACAATGGCTTCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCG 2874 |||||||| ||| ||||||||||| |||||| ||||| |||| ||||| ||| | || | Sbjct 241661 TGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTG 241720 Query 2875 CCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACA 2934 |||| ||||||| | | ||||||| ||||||||||||||||||||| || |||| ||| Sbjct 241721 CCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACC 241780 Query 2935 GAGTCATCACCA 2946 |||||||||||| Sbjct 241781 GAGTCATCACCA 241792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14974832424930