Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq64484 172 2e-39 seq57116 152 2e-33 >seq64484 Length=1190 Score = 172 bits (190), Expect = 2e-39 Identities = 294/412 (71%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 5516 GGCGGGTGTG--GTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCC 5573 || ||||||| ||| ||| | || ||| | |||||||||||||| |||| | || | Sbjct 442 GGAGGGTGTGAGGTGTATACCCACACCGTCATTGCTACACTTGCCAGAGCCCCTGTGCGC 383 Query 5574 GCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGG-CTTTCCCCGTCAAGC 5632 || ||| |||||||| ||| || || ||| | ||| |||| | ||||||| | Sbjct 382 ATTCTGTTCACTTTCTTCGCTTGCTGTCCCGCGAAGTTGGCCGAACGTTCCCCGAGGAA- 324 Query 5633 TCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAA 5692 ||| | || |||||||| |||||| |||| |||||||||||||||| ||| | ||| | | Sbjct 323 TCTGA-TCCGGGGCTCCTTTTAGGCTTCCCATTTAGTGCTTTACGGTACCGCTACCACTA 265 Query 5693 AAAACTTGATTTGGGTGATGGTTCA-CGTAGTGGGCCATCGCCCTGATAGACGGTTTTTC 5751 | | |||| || ||||||||| ||| | | ||| |||| | |||| | || | |||| Sbjct 264 AGATCTTGGTTAGGGTGATGGGTCAGAGGAATGGCCCATGTCTCTGAAAAACAG-GTTTC 206 Query 5752 GCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGG-AACA 5810 || |||| || |||| ||||| |||||||||||| ||| ||| ||||| || | Sbjct 205 GCGCTTTAACTCTGGATGCCACGATCTTTAATAGTGCACTGCGTCTCCTGACTGGAAAGA 146 Query 5811 ACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTT---GCCGATTTC- 5866 ||| | ||| || ||| ||||| ||||||| ||||| | |||| || | ||| Sbjct 145 CCACAC-GCCCGATACCGGTCTATTGTTTTGATATATAAAGAGTTTTTAGCCCCACTTCT 87 Query 5867 GGCCTATTGGTTAAAAAATGA-GCTGATTTAACAAAAATTTAAC--GCGAAT 5915 | || ||||| || |||| | |||||| || || ||| || |||||| Sbjct 86 GCCCCATTGGCTATAAAAGCACATTGATTTTACGAAGATTCTACCAGCGAAT 35 >seq57116 Length=1022 Score = 152 bits (168), Expect = 2e-33 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||| |||| |||||||| |||||| |||||||| ||| |||| | || || Sbjct 906 ACGCGCCCTGTATCGGCACATTAAGCACGGCGGTTGTGGTGGATACACGCAATGAGAACG 965 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCG 5604 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || Sbjct 966 CTACACTTGCCAGCGCCCTGGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTTCACG 1022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20372132686936