Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq3673 214 5e-52 seq519 120 9e-24 >seq3673 Length=216134 Score = 214 bits (236), Expect = 5e-52 Identities = 288/399 (72%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 1198 TGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACC 1257 ||||| |||| || | || ||| | ||||| | || |||| | | | || | || Sbjct 107263 TGGTGTCAGAGAAAGTTTGGGAAGTGGAACACCATCTGACTGTCCTG-CTCGCCATTACT 107205 Query 1258 GGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATGCGTTAAC 1317 || || |||||||| || ||||| || | |||||||| ||| |||| |||||| ||||| Sbjct 107204 GGAAAAACCAACATGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAAC 107145 Query 1318 TGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTGGTGGGAG 1377 ||| ||||| ||||||| || |||| ||||||||| || || || | | ||||||||| Sbjct 107144 TGGCCCAACAAGAACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAG 107085 Query 1378 GAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGGATCTCGG 1437 || || ||||||| |||| |||||||| | |||||||| |||||||| ||||| || Sbjct 107084 GAAGGAAAAATGA---CCAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGG 107028 Query 1438 GTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGTCATTATT 1497 | |||| | ||| || || ||| | | |||| | | || | |||||| || Sbjct 107027 ATCTTGGTGGGCTGAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATC 106968 Query 1498 ACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGAGCATAAG 1557 ||| |||||||||||||| | ||||||||||||||||| || || || || || | Sbjct 106967 ACCTCCAACACCAACATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGG 106908 Query 1558 CAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTG 1596 ||| ||||| ||| | ||||| || || || || || Sbjct 106907 AGGCCATTGGAAGACCGCATGTTCAAATTCAAACTGGTG 106869 >seq519 Length=1696111 Score = 120 bits (132), Expect = 9e-24 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 2874 ATGGCTGAAGGAGGTGGCGGCCCAGTGGGCGATGCAGGCCAGGGTGCCGATGGAGTGGGC 2933 |||||| ||| |||||| ||| ||| ||| |||||||||||||||||||| | Sbjct 241675 ATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTGCCGATGGAGTGGAC 241734 Query 2934 AATTCCTCCGGAAATTGGCATTGCGATTCCCAATGGCTGGAAAACGGAGTCGTCACTCGA 2993 | |||||| || |||||||||||||||||| | || ||| | || ||||| |||| Sbjct 241735 ATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACCGAGTCATCACCAAG 241794 Query 2994 ACCACCCGAACCTGGGTCTTGCCCAGCTACAACAACCACCTGTACAAAC 3042 | ||| | |||||||| ||||||| | |||| |||||| ||||||| Sbjct 241795 TCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTACAAAC 241843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14898087607890