Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq3673 233 6e-58 seq519 87.8 5e-14 >seq3673 Length=216134 Score = 233 bits (258), Expect = 6e-58 Identities = 908/1412 (64%), Gaps = 61/1412 (4%) Strand=Plus/Minus Query 389 ATTGTTCGCGTTCCATTTGATGTGGAAGAGCACCTGCCTGGAATTTCTGACAACTTTGTA 448 ||| ||||||| | | ||| | ||||| || ||||| |||||| | ||| |||| Sbjct 108182 ATTATTCGCGTGCTGTCAGATATCGAAGAACATCTGCCAGGAATTCCAGACTC--TTGTG 108125 Query 449 GACTGGGTAACTGGTCAAATTTGGGAGCTGCCTCCCGAGTCAGATTTGAATTTGACTCTG 508 ||| || | || || ||| || ||| || | || ||||||||||| | ||| || | Sbjct 108124 GACCGGATCACCGGCCAAGAATGAGAGTTGTCACCGGAGTCAGATTTCGACGTGAGTCAG 108065 Query 509 ATTGAGCAGCCTCAGCTGACGGTGGCTGACAGAATTCGCCGC-GTG----TTCCTGTACG 563 | ||| ||||| |||||||| ||| || ||| || || ||| || ||| | | Sbjct 108064 ACTGAACAGCCCCAGCTGACACAGGCCGA--GAA---GCTGCAGTGGTAATTTCTGAATG 108010 Query 564 AGTGGAACAAATTTTCCAAGCAGGAGAGCAAATTCTTTGTGCAGTTTGAAAAGGGATCTG 623 |||||| | || || |||| || || | ||| | ||| | ||| ||||| Sbjct 108009 AGTGGACCCAAATTACCAAATCCGACCCCAGCTATTTTATACAGCTCATAAAAGGATCCC 107950 Query 624 AATATTTTCATCTGCACACGCTCGTGGAGACCTCCGGCATCTCTTCTATGGTCCTTGGCC 683 ||||||||||||| |||| ||| ||| || || || | ||||| || || | Sbjct 107949 AATATTTTCATCTTCACATGCTGGTGAGTTCCGAGGGAATGAAATACATGGTGCTAGGTC 107890 Query 684 GCTACGTGAGTCAGATTCGCGCCCAGCTGGTGAAGGTGG-TGTTCCAGAACATTGAGCCG 742 | || ||| ||||||| || |||| || || | || || ||| | ||||| Sbjct 107889 GATATCTGAATCAGATT-GCAACCAGACTTTGCAGTCAAATTTTTCAAAACCTGGAGCCC 107831 Query 743 CGGATTAACGACTGGGTCGCCATCACCAAGGTAAAGAAGGGCGGAGCCAATAAGGTGGTG 802 | || || || | || ||||||| ||| | |||||||| |||| | | Sbjct 107830 GGTTTTGGTGATTGACTGGCTGTCACCAAACCCAAGCACAACGGAGCCAGTAAGCT--TT 107773 Query 803 GATTCTGGG--TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGG 860 || | | || |||||| | | ||||||| ||| | || |||||||||| || Sbjct 107772 GAGACATGAACTACATTCCCACTTCTTTGCTGCCCAAGCAAAAGCCTGAGCTTCAGTAGG 107713 Query 861 CGTGGACTAACCTCGAAGAGTATAAATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGC 920 |||||||| |||| | |||||||| || || || ||| | |||||||| | ||||| Sbjct 107712 CGTGGACTGACCTGGGCGAGTATAAGAGTGCAGCTCTGAATTTAGAGGAGCGGAGACGGC 107653 Query 921 TCGTCGCTCAGTTTCAGCTTGAGTCCTCGCAGC--GCTCGCAAGAGGCATCTTCCCAGAG 978 | | || ||| || ||| |||| || |||||| || || |||||| Sbjct 107652 TGCTGAATCTGTTCTAGG--GAGATCTCGGGGCTCGCTCGCTCGA-----CTCCCCAGAA 107600 Query 979 GGAC-----------GTTTCGG-CTGACC--CGGTCATCAAGAGCAAGACTTCCCAGAAA 1024 | | | ||| | ||| | || | |||||| ||| || Sbjct 107599 AGCCAAGATAACCAAGATTCTAACCCACCTCCCCTCTACTGCAGCAAGGGGATGCAGCAA 107540 Query 1025 TACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGATT 1084 |||||||| |||||| |||| ||||| || | || | |||||| ||||||| ||||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGGTGACTTCCAAGAAGCAATGGATC 107480 Query 1085 CAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTC--CACGGGAAACTCTCGGAGCCAGA 1142 |||||||| | || || || |||| ||| | | | ||| ||| | ||| Sbjct 107479 CAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCAT--AGA 107422 Query 1143 TTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACT 1202 | | || | |||||| | | || || ||| |||||||| ||||| | |||| Sbjct 107421 TACAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACT 107362 Query 1203 ATCTCGTGGGACAGACTGTTCCAGAGGACATTTCTGAAAACAGAATCTGGCAGATTTTTG 1262 | || | || | || | |||||||| ||| ||| ||||| ||| Sbjct 107361 ACCTGAT----CACCC----CCTGGCGACATTTCCACTAACCACATCCACCAGATCTTTA 107310 Query 1263 ATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCG 1322 || || || |||| || || ||| || |||||| ||| | | ||||| | Sbjct 107309 GCCTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTCAGATGGTGTCAGAGAA 107251 Query 1323 CCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACA 1382 ||||| ||| |||||||| |||| |||| | | ||| | || ||||| ||||||| Sbjct 107250 AGTTTGGGAAGTGGAACACCATCTGACTGTCCTG-CTCGCCATTACTGGAAAAACCAACA 107192 Query 1383 TCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGA 1442 | || || |||||| ||| | || || | || || || | |||||| | || ||| Sbjct 107191 TGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGA 107132 Query 1443 ACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGA 1502 |||| || || || || | ||||||||||| ||||| |||| Sbjct 107131 ACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA 107072 Query 1503 CCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATC 1562 ||| |||||||||| | ||||||||||| |||| || || | | |||| Sbjct 107071 CCA---AGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCT 107015 Query 1563 AAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCTCCAATACTA 1622 ||| ||||| || | || | |||| || | ||| || ||||||||||| || | Sbjct 107014 GAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCA 106955 Query 1623 ACATGTG-TGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAA 1681 ||||||| |||| | | || |||||| ||| |||||||||||| | ||| ||||| Sbjct 106954 ACATGTGCTGTG-TCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAA 106896 Query 1682 GACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACC 1741 ||||||||||||| ||| |||| || | || ||| | || |||||| | || Sbjct 106895 GACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACA 106836 Query 1742 AAGCAGGAAGTCAAAGACTT-TTTTGCTTGGG 1772 || || ||||||||||||| |||||| |||| Sbjct 106835 AAAGAGAAAGTCAAAGACTTTTTTTGCCTGGG 106804 >seq519 Length=1696111 Score = 87.8 bits (96), Expect = 5e-14 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 2849 CAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTCCACTTGG-TC 2907 || |||||||| ||||||| | | |||| || ||||||||||||||||||| || | Sbjct 241714 CAGGGTGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTG 241773 Query 2908 AGAGAGCCACGTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACAACCA 2967 |||| || |||| ||||| || ||| |||||||||| |||| || | |||| ||| Sbjct 241774 GGAGA-CCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCA 241832 Query 2968 CCTGTAC 2974 ||| ||| Sbjct 241833 CCTCTAC 241839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14894889907180