Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq3673 118 3e-23 seq519 107 6e-20 >seq3673 Length=216134 Score = 118 bits (130), Expect = 3e-23 Identities = 134/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 1565 ACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTT 1624 || ||||| |||||||| || ||||| || | |||||||| || |||| || || || Sbjct 107207 ACTGGAAAAACCAACATGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATT 107148 Query 1625 AACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATATGGTGG 1684 |||||| | || |||||||||| || | |||||||| || || || | | |||||| Sbjct 107147 AACTGGCCCAACAAGAACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGG 107088 Query 1685 GAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggggggTC 1743 ||||| |||||||||||| || || ||||| || || || || || ||||| || || Sbjct 107087 GAGGAAGGAAAAATGACC---AAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATC 107032 >seq519 Length=1696111 Score = 107 bits (118), Expect = 6e-20 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 3085 GGGTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCCAATGGCTGGG 3144 ||||||||||||||||| | | ||||||| |||||||||||||||||| | || |||| Sbjct 241716 GGGTGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGG 241775 Query 3145 AGACACAGTCATTACCAAGACTACAAGAACCTGGGTCCTGCCAAGCTACAACAACCACAT 3204 |||| |||||| |||||| |||| | |||||||| |||| | | |||| |||| | Sbjct 241776 AGACCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCT 241835 Query 3205 GTACCAA 3211 ||| || Sbjct 241836 CTACAAA 241842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16298680518870