Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq3673 257 5e-65 seq519 156 1e-34 >seq3673 Length=216134 Score = 257 bits (284), Expect = 5e-65 Identities = 919/1413 (65%), Gaps = 63/1413 (4%) Strand=Plus/Minus Query 380 ATTGTTCGCGTCCCATTTGACGTGGAGGAACATCTGCCTGGAATTTCTGACAGCTTTGTG 439 ||| ||||||| | | || | || ||||||||||| |||||| | ||| ||||| Sbjct 108182 ATTATTCGCGTGCTGTCAGATATCGAAGAACATCTGCCAGGAATTCCAGACTC--TTGTG 108125 Query 440 GACTGGGTAACTGGTCAAATTTGGGAGCTGCCTCCAGAGTCAGATTTAAATTTGACTCTG 499 ||| || | || || ||| || ||| || | || ||||||||||| | ||| || | Sbjct 108124 GACCGGATCACCGGCCAAGAATGAGAGTTGTCACCGGAGTCAGATTTCGACGTGAGTCAG 108065 Query 500 GTTGAACAGCCTCAGTTGACGGTGGCTGATAGAATTCGCCGC-GTG----TTCCTGTACG 554 ||||||||| ||| |||| ||| || ||| || || ||| || ||| | | Sbjct 108064 ACTGAACAGCCCCAGCTGACACAGGCCGA--GAA---GCTGCAGTGGTAATTTCTGAATG 108010 Query 555 AGTGGAACAAATTTTCCAAGCAGGAGTCCAAATTCTTTGTGCAGTTTGAAAAGGGATCTG 614 |||||| | || || |||| || ||| | ||| | ||| | ||| ||||| Sbjct 108009 AGTGGACCCAAATTACCAAATCCGACCCCAGCTATTTTATACAGCTCATAAAAGGATCCC 107950 Query 615 AATATTTTCATCTGCACACGCTTGTGGAGACCTCCGGCATCTCTTCCATGGTCCTCGGCC 674 ||||||||||||| |||| ||| ||| || || || | |||||| || || | Sbjct 107949 AATATTTTCATCTTCACATGCTGGTGAGTTCCGAGGGAATGAAATACATGGTGCTAGGTC 107890 Query 675 GCTACGTGAGTCAGATTCGCGCCCAGC---TG--GTGAAAGTGGTCTTCCAGGGAATTGA 729 | || ||| ||||||| || |||| || || ||| | || || | || Sbjct 107889 GATATCTGAATCAGATT-GCAACCAGACTTTGCAGTCAAATT----TTTCAAAACCTGGA 107835 Query 730 ACCCCAGATCAACGACTGGGTCGCCATCACCAAGGTAAAGAAGGGCGGAGCCAATAAGGT 789 ||| | || || | || ||||||| ||| | |||||||| |||| | Sbjct 107834 GCCCGGTTTTGGTGATTGACTGGCTGTCACCAAACCCAAGCACAACGGAGCCAGTAAGCT 107775 Query 790 GGTGGATTCTGGG--TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAG 847 | || | | || |||||| | | ||||||| ||| | || ||||||||| Sbjct 107774 --TTGAGACATGAACTACATTCCCACTTCTTTGCTGCCCAAGCAAAAGCCTGAGCTTCAG 107717 Query 848 TGGGCGTGGACAAACCTGGACGAGTATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAA 907 | ||||||||| |||||| ||||||||| || || |||||| | |||||||| | | Sbjct 107716 TAGGCGTGGACTGACCTGGGCGAGTATAAGAGTGCAGCTCTGAATTTAGAGGAGCGGAGA 107657 Query 908 CGGCTCGTCGCGCAGTTTCTGGCAGAATCCTCGCAGCGCTCGCAGGAGGCGGCTTCGCAG 967 ||||| | | ||| || ||| |||| | |||||| | || || | ||| Sbjct 107656 CGGCTGCTGAATCTGTTCTAGGGAGAT--CTCG--GGGCTCGCTCGCT-CGACTCCCCAG 107602 Query 968 CGTG------------AG-TTCTCGGCTGAC-CCGGTCATCAAAAGCAAGACTTCCCAGA 1013 | || |||| | | || || | |||||| ||| Sbjct 107601 AAAGCCAAGATAACCAAGATTCTAACCCACCTCCCCTCTACTGCAGCAAGGGGATGCAGC 107542 Query 1014 AATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGA 1073 |||||||||| || || ||||| | ||| | |||| | |||||| ||||||| |||| Sbjct 107541 AATACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGGTGACTTCCAAGAAGCAATGGA 107482 Query 1074 TCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGA 1133 ||||||| || | || || ||||||| ||| | || | |||| ||| Sbjct 107481 TCCAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGA 107422 Query 1134 TCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACT 1193 | || || | |||||| | ||| || ||| ||||| || | || | |||| Sbjct 107421 TACAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACT 107362 Query 1194 ACCTCGTGGGGAGCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTG 1253 |||| || | || || | |||||||| | ||| ||| || || ||| Sbjct 107361 ACCT------GATCACCC--CCTGGCGACATTTCCACTAACCACATCCACCAGATCTTTA 107310 Query 1254 AGATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCT 1313 ||||||| |||| || || ||| || || ||||| | | ||||||||| | Sbjct 107309 GCCTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTCAGATGGTGTCAGAGAA 107251 Query 1314 CCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACA 1373 || ||| |||||||| |||| || | | | | ||||| || || || ||||||| Sbjct 107250 AGTTTGGGAAGTGGAACACCATCTGACTGTCCTG-CTCGCCATTACTGGAAAAACCAACA 107192 Query 1374 TCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAA 1433 | || |||||||||| || |||| || | ||||| ||| | |||||| |||| | | Sbjct 107191 TGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGA 107132 Query 1434 ACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGA 1493 |||| ||||| | ||||| |||||||| || | | ||||||||||| ||||| |||| Sbjct 107131 ACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA 107072 Query 1494 CCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATC 1553 | ||||||||| || || ||||||||||| ||||| || || | | ||| | | Sbjct 107071 C---CAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGT-GGGC 107016 Query 1554 AGAAA-TGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACA 1612 |||| ||||| || | || || | || || | ||||| | || ||||| || Sbjct 107015 TGAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACC 106956 Query 1613 AACATGTG-TGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGA 1671 |||||||| ||| || | || ||||| ||| |||||||||||| | ||| |||| Sbjct 106955 AACATGTGCTGT-GTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGA 106897 Query 1672 GGACCGCATGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTAC 1731 ||||||||||||||||| ||||| | || ||| | || |||||| | || Sbjct 106896 AGACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGAC 106837 Query 1732 TAAGCAGGAAGTCAAGGAC-TTTTTTGCTTGGG 1763 || || ||||||| ||| |||||||| |||| Sbjct 106836 AAAAGAGAAAGTCAAAGACTTTTTTTGCCTGGG 106804 >seq519 Length=1696111 Score = 156 bits (172), Expect = 1e-34 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 2767 TTTGGGAGCTGATACAATGTCTGCGGGAGGTGGCGGCCCATTGGGCGACAATAACCAAGG 2826 ||||||| ||| ||| ||| || | || |||||| ||| ||| |||||| ||||| || Sbjct 241659 TTTGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGG 241718 Query 2827 TGCCGATGGAGTGGGCAATGCCTCGGGAGATTGGCATTGCGATTCCACGTGGATGGGGGA 2886 |||||||||||||| || | |||| || ||||||||||||||||||| || |||| || Sbjct 241719 TGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGA 241778 Query 2887 CAGAGTCGTCACCAAGTCCACCCGAACCTGGGTGCTGCCCAGCTACAACAACCACCAGTA 2946 | ||||| |||||||||| ||| | |||||||| |||||| | |||| ||||| || Sbjct 241779 CCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTA 241838 Query 2947 CCGAGAGATCAAAAGCGGC 2965 | | | |||| ||| || Sbjct 241839 CAAACAAGTCAACAGCAGC 241857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14731807170970