Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq3673 389 1e-104 seq519 168 2e-38 >seq3673 Length=216134 Score = 389 bits (430), Expect = 1e-104 Identities = 534/742 (72%), Gaps = 17/742 (2%) Strand=Plus/Minus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGAC--CGGGGCATCACCTCCGAGAAGCAGTGGA 1060 ||||||| ||||| | ||| ||||| | ||||| | || ||| ||||||| |||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGG--TGACTTCCAAGAAGCAATGGA 107482 Query 1061 TCCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGA 1120 |||||||| || | | ||| || |||||| ||| || || | | || | || ||| Sbjct 107481 TCCAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGA 107422 Query 1121 TCAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACT 1180 | || || | ||||| || ||||||||||| |||||||||| | || | |||| Sbjct 107421 TACAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACT 107362 Query 1181 ACCTGGTGGGGCCCTCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGG 1240 ||||| | |||| || |||||| || |||| |||| ||| ||| | Sbjct 107361 ACCTGATCACCCCCTGGC--------GACATTTCCACTAACCACATCCACCAGATCTTTA 107310 Query 1241 AGCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAAA 1300 ||||| || ||||||| || ||| | ||| ||| | ||| | ||| |||| || Sbjct 107309 GCCTGAATGGTGACGATCCCGCTTACTG-GCCTCTGTCCTCCTCAGATGGTGTCAGAGAA 107251 Query 1301 AGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACA 1360 |||| |||||| | ||||||||||| |||| | | ||||| || || || ||||||| Sbjct 107250 AGTTTGGGAAGTGGAACACCATCTGACTGTCCTG-CTCGCCATTACTGGAAAAACCAACA 107192 Query 1361 TTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1420 | || || ||||||| || || || || ||||||| ||| | |||||| |||| ||| Sbjct 107191 TGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGA 107132 Query 1421 ACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1480 |||| ||||||| ||| ||||| |||||| ||||| | ||||||||||| || || |||| Sbjct 107131 ACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA 107072 Query 1481 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1540 | |||||| |||||||| |||||||||||||| || || | | | |||| | Sbjct 107071 C---CAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCT 107015 Query 1541 AAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCA 1600 ||| || ||| ||| ||||||| || |||| | || ||| ||||||||||||||| Sbjct 107014 GAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCA 106955 Query 1601 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGG 1660 |||||||| || || |||||||||||||| ||||| || ||| | ||| ||| | | Sbjct 106954 ACATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAG 106895 Query 1661 ACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACGA 1720 |||| ||||||||||| |||| || ||||||| | |||| ||||||||||| | Sbjct 106894 ACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACAA 106835 Query 1721 AGCAGGAAGTCAAAGAGTTCTT 1742 | || |||||||||| || || Sbjct 106834 AAGAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 168 bits (186), Expect = 2e-38 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 2817 TGGGATCTGGTACAGTGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGTG 2876 ||||| ||||||| ||||| |||| |||||| ||||| |||| ||||| ||| | |||| Sbjct 241661 TGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTG 241720 Query 2877 CCGACGGAGTGGGTAATGCCTCAGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACA 2936 |||| ||||||| | | ||||||| ||||||||||||||||||||| || |||| ||| Sbjct 241721 CCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACC 241780 Query 2937 GAGTCATTACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2996 ||||||| |||| ||| | ||||||| ||||||| | |||| ||||||||||| Sbjct 241781 GAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTACA 241840 Query 2997 AGCAAATC 3004 | ||| || Sbjct 241841 AACAAGTC 241848 Score = 105 bits (116), Expect = 2e-19 Identities = 312/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 4011 TCAACAACCAGGGAGCCTTACCTGGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGG 4070 ||||| ||||||| || ||||||||||| |||| || ||||||| || | || Sbjct 240508 TCAACCACCAGGGCATTTTGCCTGGCATGGTACGGCAAGAC--AGACGTGTCTCTTCGGG 240451 Query 4071 GTCCCATCTGGGCCAAGATTCCTCACACGGATGGCAACTTTCACCCGTCTCCTTTGATGG 4130 | ||||||||| |||| |||| | | ||||| |||||||| ||| || | || | Sbjct 240450 GCCCCATCTGGCCCAAAGTTCCAGAAAGGGATGAACACTTTCACTCGTTGCCACTTAT-G 240392 Query 4131 GCGGCTTTGGACTTAAACATCCGCCTCCTCAGA-TCCTGATCAAGAACACTCCCGTTCCC 4189 | || ||||| || || | |||||| || | || || || || || | |||||| Sbjct 240391 GTGGATTTGGCCTCAAGAGCCTGCCTCCCCAAATTCTTGTAAAAAAATACATCAGTTCCC 240332 Query 4190 GCTAATCCTCCGGAGGTGTTTACTCCTGCCAAGTTTGCTTCGTTCATCACACAGTACAGC 4249 | || || || | ||| || || ||||| || | || ||||| || Sbjct 240331 GGAAACCCCCCAACAGCCTTTGACATGGCTAAATTTGCCTC--TTATTACACAATATTCA 240274 Query 4250 ACCGGACAAGTCAGCGTGGAAATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGG 4309 | ||||| || || | ||||| | |||||||| | ||||| | ||| | || Sbjct 240273 ATTGGACAGGTAAGTATAGAAATAGGATGGGAGCTACGAAAGGAGATGTCCAAAAGGCGG 240214 Query 4310 AACCCGGAGATTCAGTACACCTCCAACTTTGAAAAGCAG----ACTGGTGTGGACTTTGC 4365 |||||||| | | |||||||| |||| | | ||| |||| || ||| ||||| Sbjct 240213 AACCCGGAAACTGAGTACACCAGAAACT----ACACCAGACCTACTGATGGGGATTTTGC 240158 Query 4366 CGTTGACAGCCAGGGTGTTTACTCTGAGCCTCGCCCTATTGGCACTCGTTACCTCACCCG 4425 || ||| ||| || |||| || ||||| || ||||||| || || || || | | | Sbjct 240157 AGTGGACGTCCACGGCATTTATTCAGAGCCCCGGTCTATTGGAACCCGGTATCTGAACAG 240098 Query 4426 TAATCTGTAATTGCATGTTAATCAATAAACCGGTTGATTCGTTTCAGTTGAAC 4478 ||||||| |||| ||||| |||| | |||| |||||||| ||| Sbjct 240097 ACCATTGTAATT-ATTGTTCCTCAAT-AACCCATGAATTCCTTTCAGTTAAAC 240047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14984425527060