Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq3673 361 2e-96 seq519 168 2e-38 >seq3673 Length=216134 Score = 361 bits (400), Expect = 2e-96 Identities = 528/742 (71%), Gaps = 17/742 (2%) Strand=Plus/Minus Query 902 TATATGGAGCTGGTCGGGTGGCTGGTGGAC--CGGGGCATCACCTCCGAGAAGCAGTGGA 959 || |||| ||||| | ||| ||||| | ||||| | || ||| ||||||| |||| Sbjct 107539 TACATGGCCCTGGTAGACTGGTTGGTGAAAAACGGGG--TGACTTCCAAGAAGCAATGGA 107482 Query 960 TCCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGA 1019 |||||||| || | | ||| || |||||| ||| || || | | || | || ||| Sbjct 107481 TCCAGGAGAACAAAGACTCATATCTCTCCTACAATGCATCCCCTGAATCTCAATCATAGA 107422 Query 1020 TCAAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACT 1079 | || || | ||||| || ||||||||||| |||||||||| | || | |||| Sbjct 107421 TACAGTGTGCCTTAGACAACACCTGCAAGATCATGTCGCTGACCAAGACTGCCGCTGACT 107362 Query 1080 ACCTGGTGGGGCCCTCGCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCG 1139 ||||| | |||| || |||||| || |||| |||| ||| ||| | Sbjct 107361 ACCTGATCACCCCCTGGC--------GACATTTCCACTAACCACATCCACCAGATCTTTA 107310 Query 1140 CTCTCAACGGCTACGACCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAA 1199 || || || |||| || || ||| | ||| ||| | ||| | ||| ||||| || Sbjct 107309 GCCTGAATGGTGACGATCCCGCTTACTG-GCCTCTGTCCTCCTCAGATGGTGTCAGAGAA 107251 Query 1200 AGTTCGGGAAACGCAACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACA 1259 |||| ||||| | ||||||||||| |||| | | ||||| || || || ||||||| Sbjct 107250 AGTTTGGGAAGTGGAACACCATCTGACTGTCCTG-CTCGCCATTACTGGAAAAACCAACA 107192 Query 1260 TTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGA 1319 | || || ||||||| || || || || ||||||| ||| | |||||| |||| ||| Sbjct 107191 TGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATTAACTGGCCCAACAAGA 107132 Query 1320 ACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGA 1379 |||| ||||||| || ||||| |||||| ||||| | ||||||||||| || || |||| Sbjct 107131 ACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGGGAGGAAGGAAAAATGA 107072 Query 1380 CGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACC 1439 | |||||| |||||||| |||||||||||||| || || | | | |||| | Sbjct 107071 C---CAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCCTGGATCTTGGTGGGCT 107015 Query 1440 AAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCA 1499 ||| || ||| ||| ||||||| || |||| | || ||| ||||||||||||||| Sbjct 107014 GAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATCATCACCTCCAACACCA 106955 Query 1500 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGG 1559 |||||||| || || |||||||||||||| ||||| || ||| | ||| | | | Sbjct 106954 ACATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACACTGGAGGCCATTGGAAG 106895 Query 1560 ACCGGATGTTTAAGTTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAAGGTGACAA 1619 |||| ||||| || ||| |||| || ||||||| | |||| ||||||||||||| Sbjct 106894 ACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAACTTCGGCAAGGTGACAA 106835 Query 1620 AGCAGGAAGTCAAAGAGTTCTT 1641 | || |||||||||| || || Sbjct 106834 AAGAGAAAGTCAAAGACTTTTT 106813 >seq519 Length=1696111 Score = 168 bits (186), Expect = 2e-38 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 2716 TGGGACCTAATACAATGGCTGCAGGCGGTGGCGCACCAATGGCAGACAATAACGAAGGCG 2775 |||||||| ||| |||||| |||| |||||| ||||| |||| ||||| ||| | || | Sbjct 241661 TGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTG 241720 Query 2776 CCGACGGAGTGGGTAGTTCCTCGGGAAATTGGCATTGCGATTCCACATGGCTGGGCGACA 2835 |||| ||||||| | |||||| || ||||||||||||||||||||| || |||| ||| Sbjct 241721 CCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACC 241780 Query 2836 GAGTCATCACCACCAGCACCCGAACCTGGGCCCTGCCCACCTACAACAACCACCTCTACA 2895 |||||||||||| ||| | ||||||| ||||||| | |||| ||||||||||| Sbjct 241781 GAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCTACA 241840 Query 2896 AGCAAATC 2903 | ||| || Sbjct 241841 AACAAGTC 241848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13935579694180