Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq3673 159 9e-36 seq519 113 1e-21 >seq3673 Length=216134 Score = 159 bits (176), Expect = 9e-36 Identities = 332/497 (67%), Gaps = 5/497 (1%) Strand=Plus/Minus Query 1070 ATCTACCGGCTGTTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTC 1129 ||| ||| | | ||| || |||| || |||| ||||| ||| || | || || ||| Sbjct 107325 ATCCACCAGATCTTTAGCCTGAATGGTGACGATCCCGCTTACT-GGCCTCTGTCCTCCTC 107267 Query 1130 GGCTGGTGCCGCACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACG 1189 | ||||| | | || || ||| | |||||| |||| || | | | || ||| Sbjct 107266 AGATGGTGTCAGAGAAAGTTTGGGAAGTGGAACACCATCTGACTGTCCTGCTCG-CCATT 107208 Query 1190 ACCGGCAAGACGAACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTC 1249 || || || || ||| | || ||||||||| || | || || ||||||| ||| | Sbjct 107207 ACTGGAAAAACCAACATGGCTGAGGCCATCGTTCATGCTGTCCCGCTCTACGGATGCATT 107148 Query 1250 AACTGGACCAACGAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGG 1309 |||||| ||||| ||||||||||||||| |||||||||||||||| || | | |||||| Sbjct 107147 AACTGGCCCAACAAGAACTTCCCCTTCAGCGACTGCGTGGACAAGGTGGTGGTGTGGTGG 107088 Query 1310 GAGGAGGGCAAGATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGC 1369 ||||| || || |||| ||||||| || ||| ||||||||||| || || || | Sbjct 107087 GAGGAAGGAAAAATGA---CCAAGGTGGTGGAGTCGGCCAAGGCCATTCTGGGTGGATCC 107031 Query 1370 AAGGTGCGCGTCGACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATN 1429 | | || | | || || |||| || |||||| | |||| | ||||| Sbjct 107030 TGGATCTTGGTGGGCTGAAACTGTAAGAGTTCCATCCAGATCCACTCCACTCTGGTCATC 106971 Query 1430 NNNNNNNNNNNNNNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCAC 1489 |||||||| ||| ||||||||||| || || || || ||| Sbjct 106970 ATCACCTCCAACACCAACATGTGCTGTGTCATCGACGGGAACAGCACAACCTTTGAACAC 106911 Query 1490 CGGCAGCCGCTCGAGGACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACC 1549 || ||| | || ||| | |||||||| ||| | || ||| ||| |||||| | Sbjct 106910 TGGAGGCCATTGGAAGACCGCATGTTCAAATTCAAACTGGTGGTCCAACTGGAGCCCAAC 106851 Query 1550 TTCGGCAAGATCACCAA 1566 ||||||||| | || || Sbjct 106850 TTCGGCAAGGTGACAAA 106834 >seq519 Length=1696111 Score = 113 bits (124), Expect = 1e-21 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 2618 ATATGGCATCTGCTGAGGTGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAG 2677 || ||| | ||| | | ||||| | ||||||||| |||| ||| |||| | || | Sbjct 241658 ATTTGGGACCTGGTACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGG 241717 Query 2678 GTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACG 2737 ||||||||||||||| | | ||||||| |||||||||| ||||||| || ||| | Sbjct 241718 GTGCCGATGGAGTGGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAG 241777 Query 2738 GCGCTGTCATCACCAAGTCCACCCGAACCTGGAGCCTGCCCGCCTACAACAACCACCTCT 2797 | |||||||||||||| ||| | |||||| ||||| | | |||| |||||||| Sbjct 241778 ACCGAGTCATCACCAAGTCTACCTGCACCTGGGTATTGCCCACGTGTAACAGCCACCTCT 241837 Query 2798 AC 2799 || Sbjct 241838 AC 241839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13593425718210