Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq64484 159 1e-35 seq57116 152 2e-33 >seq64484 Length=1190 Score = 159 bits (176), Expect = 1e-35 Identities = 251/349 (72%), Gaps = 13/349 (4%) Strand=Plus/Minus Query 5517 GGCGGGTGTG--GTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCC 5574 || ||||||| ||| ||| | || ||| | |||||||||||||| |||| | || | Sbjct 442 GGAGGGTGTGAGGTGTATACCCACACCGTCATTGCTACACTTGCCAGAGCCCCTGTGCGC 383 Query 5575 GCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTCCGG-CTTTCCCCGTCAAGC 5633 || ||| |||||||| ||| || || ||| | ||| ||| | ||||||| | Sbjct 382 ATTCTGTTCACTTTCTTCGCTTGCTGTCCCGCGAAGTTGGCCGAACGTTCCCCGAGGAA- 324 Query 5634 TCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCTCCA 5693 ||| | || |||| ||| |||||| |||| |||||||||||||||| ||| | ||| | | Sbjct 323 TCTGA-TCCGGGGCTCCTTTTAGGCTTCCCATTTAGTGCTTTACGGTACCGCTACCACTA 265 Query 5694 AAAACTTGATTTGGGTGATGGTTCA-CGTAGTGGGCCATCGCCCTGATAGACGGTTTTTC 5752 | | |||| || ||||||||| ||| | | ||| |||| | |||| | || | |||| Sbjct 264 AGATCTTGGTTAGGGTGATGGGTCAGAGGAATGGCCCATGTCTCTGAAAAACAG-GTTTC 206 Query 5753 GCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGA---A 5809 || |||| || |||| ||||| |||||||||||| ||| ||| |||||| | Sbjct 205 GCGCTTTAACTCTGGATGCCACGATCTTTAATAGTGCACTGCGTCTCCTGACTGGAAAGA 146 Query 5810 CAACACTCACAACTAACTCGGCCTATTCTTTTGATTTATAAGGATTTTT 5858 | |||| | | | || ||| ||||| ||||||| ||||| || |||| Sbjct 145 CCACACGCCCGA-TA--CCGGTCTATTGTTTTGATATATAAAGAGTTTT 100 >seq57116 Length=1022 Score = 152 bits (168), Expect = 2e-33 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||| |||| |||||||| |||||| |||||||| ||| |||| | || || Sbjct 906 ACGCGCCCTGTATCGGCACATTAAGCACGGCGGTTGTGGTGGATACACGCAATGAGAACG 965 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCG 5605 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || Sbjct 966 CTACACTTGCCAGCGCCCTGGCGCCCGCTCCTTTCACTTTCTTCCCTTCCTTTCACG 1022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20375330321952