Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq519 105 2e-19 >seq519 Length=1696111 Score = 105 bits (116), Expect = 2e-19 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 2661 TACAATGGCTCAAGGAGGTGGCGGACCAATGGCAGACGATAACCAAGGCGCCGAGGGAGT 2720 ||| |||||| ||| |||||| |||| |||| ||| | ||||| || ||||| ||||| Sbjct 241671 TACGATGGCTTCAGGTGGTGGCACACCACTGGCCGACAACAACCAGGGTGCCGATGGAGT 241730 Query 2721 GGGTAATGCCTCGGGAGATTGGCATTGCGATACCCAATGGCTGGGCGACCACGTCATTAC 2780 || | | |||| || |||||||||||||| || | || |||| |||| ||||| || Sbjct 241731 GGACATTTCCTCAGGCAATTGGCATTGCGATTCCACACGGTTGGGAGACCGAGTCATCAC 241790 Query 2781 AAAATCTACCAGAACTTGGGTTCTGCCC 2808 || |||||| | || ||||| ||||| Sbjct 241791 CAAGTCTACCTGCACCTGGGTATTGCCC 241818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14565526734050