Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq19 251 2e-63 >seq19 Length=25318236 Score = 251 bits (278), Expect = 2e-63 Identities = 344/471 (73%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 1369 ATGGCTGGAA-CTATGTTAAA--GTTTGCCATGCTATTTGCTGTGTTTTAAACAGACAAG 1425 |||| ||||| | || | ||| |||| | | ||| |||||| | ||| | ||| Sbjct 3924117 ATGGATGGAATCCATATAAAATTGTTTACACTATTATGTGCTGTCT---AAATAAGCAAA 3924061 Query 1426 GAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTG 1485 |||||||||||||||| | ||| | |||||| |||| || || || |||||| | || | Sbjct 3924060 TAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAG 3924001 Query 1486 CACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACT 1545 ||||| ||||| ||| |||||| | |||| ||||| ||| |||| ||||| || | Sbjct 3924000 CACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATT 3923941 Query 1546 TTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTG 1605 |||||||||||| || ||| || || || || || ||||| |||||| || || |||| Sbjct 3923940 TTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTG 3923883 Query 1606 GACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAA 1665 |||| |||||||| || |||||| ||| ||||| |||| | | | |||| ||| Sbjct 3923882 GACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAAT 3923823 Query 1666 AAGGAAAAGGCAGCAAACA-GATTGAACCAACACCAGTCATCATGACCACAAATGAGAAC 1724 |||||||||| | |||| | | |||||||||||| | || ||||| |||| ||| || Sbjct 3923822 AAGGAAAAGG-ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAAT 3923764 Query 1725 ATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAATCAGAGAC 1784 || || | | ||| | || || ||| ||||||||| || ||||||||||| | |||| Sbjct 3923763 ATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGAC 3923704 Query 1785 AGAATGC-TTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTT 1834 || |||| | ||| | | | | ||| | ||| ||||||||||||||| Sbjct 3923703 AG-ATGCATAAACTTATACATGAGACAAAAATTGGATGGTGACTTTGGTTT 3923654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16363668246230