Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001510.1
Length=5149
Score E
Sequences producing significant alignments: (Bits) Value
seq19 251 2e-63
>seq19
Length=25318236
Score = 251 bits (278), Expect = 2e-63
Identities = 344/471 (73%), Gaps = 12/471 (3%)
Strand=Plus/Minus
Query 1369 ATGGCTGGAA-CTATGTTAAA--GTTTGCCATGCTATTTGCTGTGTTTTAAACAGACAAG 1425
|||| ||||| | || | ||| |||| | | ||| |||||| | ||| | |||
Sbjct 3924117 ATGGATGGAATCCATATAAAATTGTTTACACTATTATGTGCTGTCT---AAATAAGCAAA 3924061
Query 1426 GAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCAAATCTATTATTG 1485
|||||||||||||||| | ||| | |||||| |||| || || || |||||| | || |
Sbjct 3924060 TAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAG 3924001
Query 1486 CACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACT 1545
||||| ||||| ||| |||||| | |||| ||||| ||| |||| ||||| || |
Sbjct 3924000 CACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATT 3923941
Query 1546 TTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTG 1605
|||||||||||| || ||| || || || || || ||||| |||||| || || ||||
Sbjct 3923940 TTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTG 3923883
Query 1606 GACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAA 1665
|||| |||||||| || |||||| ||| ||||| |||| | | | |||| |||
Sbjct 3923882 GACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAAT 3923823
Query 1666 AAGGAAAAGGCAGCAAACA-GATTGAACCAACACCAGTCATCATGACCACAAATGAGAAC 1724
|||||||||| | |||| | | |||||||||||| | || ||||| |||| ||| ||
Sbjct 3923822 AAGGAAAAGG-ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAAT 3923764
Query 1725 ATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAATCAGAGAC 1784
|| || | | ||| | || || ||| ||||||||| || ||||||||||| | ||||
Sbjct 3923763 ATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGAC 3923704
Query 1785 AGAATGC-TTAACATTCATCTAACACATACCTTGCCTGGTGACTTTGGTTT 1834
|| |||| | ||| | | | | ||| | ||| |||||||||||||||
Sbjct 3923703 AG-ATGCATAAACTTATACATGAGACAAAAATTGGATGGTGACTTTGGTTT 3923654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16363668246230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |