Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001539.1
Length=5323
Score E
Sequences producing significant alignments: (Bits) Value
seq19 257 6e-65
>seq19
Length=25318236
Score = 257 bits (284), Expect = 6e-65
Identities = 282/374 (75%), Gaps = 2/374 (1%)
Strand=Plus/Minus
Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487
|||||| ||| || ||||||||||| | | | |||||| |||||||||| || |
Sbjct 3924072 TAAATAAGCAAATAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGA 3924013
Query 1488 AATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAG 1547
||||| |||| || ||| ||||| ||| || || | |||| || || ||| |||
Sbjct 3924012 AATCTCTCATAGCACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAG 3923953
Query 1548 CAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAG 1607
||||||| |||||||||||||||| || ||| |||||||||||||| ||| ||||||||
Sbjct 3923952 CAAATGTTAATTTTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA- 3923894
Query 1608 CTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTA 1667
|| || ||||| |||||||| |||||||||||| ||| ||||| ||||| |
Sbjct 3923893 -TGAAAATTTTGGACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGC 3923835
Query 1668 GAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAA 1727
|||| ||| |||| |||||| || || ||||||||| || |||| |||||||
Sbjct 3923834 ACTTTGAACAATAAGGAAAAGGATCAAAAACAACTGAACCAACACCTATAATAATGACAA 3923775
Query 1728 CTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAAC 1787
| | |||||||||||| | ||| |||| |||||| |||||| || ||||| ||||
Sbjct 3923774 CAAGTGAAAATATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAAC 3923715
Query 1788 CAATAAGAGACAGA 1801
|||||| |||||||
Sbjct 3923714 CAATAAAAGACAGA 3923701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16920429739160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |