Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq19 257 6e-65 >seq19 Length=25318236 Score = 257 bits (284), Expect = 6e-65 Identities = 282/374 (75%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487 |||||| ||| || ||||||||||| | | | |||||| |||||||||| || | Sbjct 3924072 TAAATAAGCAAATAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGA 3924013 Query 1488 AATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAG 1547 ||||| |||| || ||| ||||| ||| || || | |||| || || ||| ||| Sbjct 3924012 AATCTCTCATAGCACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAG 3923953 Query 1548 CAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAG 1607 ||||||| |||||||||||||||| || ||| |||||||||||||| ||| |||||||| Sbjct 3923952 CAAATGTTAATTTTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA- 3923894 Query 1608 CTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTA 1667 || || ||||| |||||||| |||||||||||| ||| ||||| ||||| | Sbjct 3923893 -TGAAAATTTTGGACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGC 3923835 Query 1668 GAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAA 1727 |||| ||| |||| |||||| || || ||||||||| || |||| ||||||| Sbjct 3923834 ACTTTGAACAATAAGGAAAAGGATCAAAAACAACTGAACCAACACCTATAATAATGACAA 3923775 Query 1728 CTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAAC 1787 | | |||||||||||| | ||| |||| |||||| |||||| || ||||| |||| Sbjct 3923774 CAAGTGAAAATATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAAC 3923715 Query 1788 CAATAAGAGACAGA 1801 |||||| ||||||| Sbjct 3923714 CAATAAAAGACAGA 3923701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16920429739160