Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001718.1
Length=5075
Score E
Sequences producing significant alignments: (Bits) Value
seq19 230 8e-57
>seq19
Length=25318236
Score = 230 bits (254), Expect = 8e-57
Identities = 304/420 (72%), Gaps = 4/420 (1%)
Strand=Plus/Minus
Query 1441 CTAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGA 1500
||||| | ||| ||| ||||||||||| || || | ||||| ||||| || ||
Sbjct 3924073 CTAAATAAGCAAATAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGG 3924014
Query 1501 AAAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCA 1560
||| | | || || ||| | || || | |||||||| | |||| ||||||||| ||
Sbjct 3924013 AAATCTCTCATAGCACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCA 3923954
Query 1561 GCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAA 1620
|| ||||| || ||||||||||||| || |||||||||||| ||||||||| |||||||
Sbjct 3923953 GCAAATGTTAATTTTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGA- 3923895
Query 1621 GCAGGAAACTTCTCTA-ACCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAAT 1679
| |||| || | | | |||||||| ||||| ||| || || || ||||| |
Sbjct 3923894 --ATGAAAATTTTGGACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGT 3923837
Query 1680 TAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGAC 1739
|||| ||| |||| |||||| ||| || ||||||||| ||| ||||||||||
Sbjct 3923836 GCACTTTGAACAATAAGGAAAAGGATCAAAAACAACTGAACCAACACCTATAATAATGAC 3923777
Query 1740 TACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACA 1799
|||| |||| | |||||| || | ||| | || || || ||||||||| ||||| ||
Sbjct 3923776 AACAAGTGAAAATATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCA 3923717
Query 1800 ACCAATAAGAGACAGAATGTTAAACATAAACCTAACCAGAAAACTGCCAGGTGATTTTGG 1859
|||||||| ||||||| ||||| || || | | |||| || ||||| |||||
Sbjct 3923716 ACCAATAAAAGACAGATGCATAAACTTATACATGAGACAAAAATTGGATGGTGACTTTGG 3923657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16126884622800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |