Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq19 230 8e-57 >seq19 Length=25318236 Score = 230 bits (254), Expect = 8e-57 Identities = 304/420 (72%), Gaps = 4/420 (1%) Strand=Plus/Minus Query 1441 CTAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGA 1500 ||||| | ||| ||| ||||||||||| || || | ||||| ||||| || || Sbjct 3924073 CTAAATAAGCAAATAGGCAAAAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGG 3924014 Query 1501 AAAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCA 1560 ||| | | || || ||| | || || | |||||||| | |||| ||||||||| || Sbjct 3924013 AAATCTCTCATAGCACAAAAAATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCA 3923954 Query 1561 GCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAA 1620 || ||||| || ||||||||||||| || |||||||||||| ||||||||| ||||||| Sbjct 3923953 GCAAATGTTAATTTTCCATTTAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGA- 3923895 Query 1621 GCAGGAAACTTCTCTA-ACCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAAT 1679 | |||| || | | | |||||||| ||||| ||| || || || ||||| | Sbjct 3923894 --ATGAAAATTTTGGACAACAAGTAAATCAATTTAAATATATTATATCTGGCAAAACAGT 3923837 Query 1680 TAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGAC 1739 |||| ||| |||| |||||| ||| || ||||||||| ||| |||||||||| Sbjct 3923836 GCACTTTGAACAATAAGGAAAAGGATCAAAAACAACTGAACCAACACCTATAATAATGAC 3923777 Query 1740 TACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACA 1799 |||| |||| | |||||| || | ||| | || || || ||||||||| ||||| || Sbjct 3923776 AACAAGTGAAAATATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCA 3923717 Query 1800 ACCAATAAGAGACAGAATGTTAAACATAAACCTAACCAGAAAACTGCCAGGTGATTTTGG 1859 |||||||| ||||||| ||||| || || | | |||| || ||||| ||||| Sbjct 3923716 ACCAATAAAAGACAGATGCATAAACTTATACATGAGACAAAAATTGGATGGTGACTTTGG 3923657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16126884622800