Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq19 185 3e-43 >seq19 Length=25318236 Score = 185 bits (204), Expect = 3e-43 Identities = 278/394 (71%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 1150 ATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGTGGACCT 1209 || |||||||| || || || ||||| |||||||||||||| |||||||| |||| | Sbjct 3924085 ATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAGAAATACTATCTTACTACATGGATCA 3924026 Query 1210 GCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACAGGC 1269 ||||| || || ||| || |||| ||||||||||| |||||||||| | || ||| Sbjct 3924025 GCAAGTACTGGGAAATCTCTCATAGCACAAAAAATAGCTCAATTAGTTGGAATCATTGGC 3923966 Query 1270 TGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAACCTAATC 1329 |||||||||||| |||| || || ||||| |||| || | ||| ||||| |||| Sbjct 3923965 TGCTACAATCCAGCAAATGTTAATTTTCCATTTAATGGCTATACAAATAAAAATTTAATA 3923906 Query 1330 TGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGT 1389 ||| | |||||| | || | || ||||| || || ||| || || | Sbjct 3923905 TGGGTTGAAGAA--TGAAAATTTTGGACAACAAGTAAATCAATTTAAATATATTATATCT 3923848 Query 1390 GGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCA 1449 ||| || || | |||| ||| |||| ||||| ||| ||| ||||||||| || Sbjct 3923847 GGCAAAACAGTGCACTTTGAACAATAAGGAAAAGGATCAAAAACAACTGAACCAACACCT 3923788 Query 1450 GTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAAAACA 1509 |||| |||||||| | |||| | || || || ||| |||||| ||| | | | || Sbjct 3923787 ATAATAATGACAACAAGTGAAAATATAACTGAAATAAGAGTTGGTTGTGAATTAAGACCA 3923728 Query 1510 GAACACAGACAACCAATAATGGATAGATGCTTAA 1543 || || | |||||||||| || |||||| ||| Sbjct 3923727 GAGCATACTCAACCAATAAAAGACAGATGCATAA 3923694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15032560309110