Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq19 273 6e-70 >seq19 Length=25318236 Score = 273 bits (302), Expect = 6e-70 Identities = 379/525 (72%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 1190 GAACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAG 1249 ||| ||||| ||| | || | | || |||||||||||||| || ||||| |||||||| Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051 Query 1250 AAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAAT 1309 ||| || |||||||| ||| ||||||||||||| ||| || |||||||||||||| Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991 Query 1310 TGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAA 1369 |||||||| ||||| | | || |||||||||||| |||||||| |||||||| || Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATTTAA 3923931 Query 1370 CGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGT 1429 | | || || ||||| |||||||| | |||||| | ||| |||||| ||||| Sbjct 3923930 TGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAGT 3923873 Query 1430 AAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGG 1489 ||| ||||||||| || || |||| || || | | || ||| |||| ||||| Sbjct 3923872 AAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAGG 3923813 Query 1490 TAGCAAAACCATC-GAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAG 1548 | ||||| || | |||||||| || | ||||||||||||| |||| | ||||| | Sbjct 3923812 -ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAA 3923754 Query 1549 TTGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATG--TAT 1606 | || || | |||| | |||||||| |||| |||||||| | |||||||| || Sbjct 3923753 TAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAA 3923694 Query 1607 TCGTGTACATCTGACCACAAGACTTCCTGGCGACTTTGGTTTACTTGATGATGAAGAGAT 1666 | | ||||| ||| || | | ||| ||||||||||||||| | || ||| || Sbjct 3923693 ACTTATACATGAGAC--AAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAAT 3923636 Query 1667 ACCAACTATTTTTAAAAAATTAGACAAACGAGGCTTCAAACCAAC 1711 |||| || ||| | | | |||||| ||| | ||| ||||| Sbjct 3923635 ACCAGACATATTTCAGTACATGGACAAAGCAGGATACAAGCCAAC 3923591 Score = 89.7 bits (98), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 3995 AACACATTCTCACCATTCACTGCAGTAGATTCAGTTGGTCCAATATATCCATGGGGAGAA 4054 ||||||| | |||||| |||| | ||| || ||||| ||||||||| || | Sbjct 3921564 AACACATACACACCATGGACTGTGCTGGATGACCCAGGACCAATTTATCCATGGAGACCA 3921505 Query 4055 ATATGGACCAAAAAACCTAACACA--GAACACCAACCAACACTAAGCGCACAAGCACCAT 4112 ||||| |||| | || |||||| ||||| ||||| | |||| ||| |||||| Sbjct 3921504 GTATGGGACAAACACCCCAACACAATGAACA--AACCACAAATAAGAACACTTGCACCAC 3921447 Query 4113 TTATATGCCAAGATAATGCACCTGGTCAGTTACTTGTAAAACTTGCACCAAACTACACTG 4172 | | || || |||||||||||||||| || ||||||||||| | | ||| | |||| Sbjct 3921446 TGGTCTGTGAAAATAATGCACCTGGTCAAATATTTGTAAAACTTACTGCTAACCATACTG 3921387 Query 4173 AT 4174 || Sbjct 3921386 AT 3921385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14648586865710