Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_026815.1
Length=4613
Score E
Sequences producing significant alignments: (Bits) Value
seq19 273 6e-70
>seq19
Length=25318236
Score = 273 bits (302), Expect = 6e-70
Identities = 379/525 (72%), Gaps = 8/525 (2%)
Strand=Plus/Minus
Query 1190 GAACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAG 1249
||| ||||| ||| | || | | || |||||||||||||| || ||||| ||||||||
Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051
Query 1250 AAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAAT 1309
||| || |||||||| ||| ||||||||||||| ||| || ||||||||||||||
Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991
Query 1310 TGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAA 1369
|||||||| ||||| | | || |||||||||||| |||||||| |||||||| ||
Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATTTAA 3923931
Query 1370 CGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGT 1429
| | || || ||||| |||||||| | |||||| | ||| |||||| |||||
Sbjct 3923930 TGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAGT 3923873
Query 1430 AAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGG 1489
||| ||||||||| || || |||| || || | | || ||| |||| |||||
Sbjct 3923872 AAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAGG 3923813
Query 1490 TAGCAAAACCATC-GAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAG 1548
| ||||| || | |||||||| || | ||||||||||||| |||| | ||||| |
Sbjct 3923812 -ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAA 3923754
Query 1549 TTGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATG--TAT 1606
| || || | |||| | |||||||| |||| |||||||| | |||||||| ||
Sbjct 3923753 TAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAA 3923694
Query 1607 TCGTGTACATCTGACCACAAGACTTCCTGGCGACTTTGGTTTACTTGATGATGAAGAGAT 1666
| | ||||| ||| || | | ||| ||||||||||||||| | || ||| ||
Sbjct 3923693 ACTTATACATGAGAC--AAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAAT 3923636
Query 1667 ACCAACTATTTTTAAAAAATTAGACAAACGAGGCTTCAAACCAAC 1711
|||| || ||| | | | |||||| ||| | ||| |||||
Sbjct 3923635 ACCAGACATATTTCAGTACATGGACAAAGCAGGATACAAGCCAAC 3923591
Score = 89.7 bits (98), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 3995 AACACATTCTCACCATTCACTGCAGTAGATTCAGTTGGTCCAATATATCCATGGGGAGAA 4054
||||||| | |||||| |||| | ||| || ||||| ||||||||| || |
Sbjct 3921564 AACACATACACACCATGGACTGTGCTGGATGACCCAGGACCAATTTATCCATGGAGACCA 3921505
Query 4055 ATATGGACCAAAAAACCTAACACA--GAACACCAACCAACACTAAGCGCACAAGCACCAT 4112
||||| |||| | || |||||| ||||| ||||| | |||| ||| ||||||
Sbjct 3921504 GTATGGGACAAACACCCCAACACAATGAACA--AACCACAAATAAGAACACTTGCACCAC 3921447
Query 4113 TTATATGCCAAGATAATGCACCTGGTCAGTTACTTGTAAAACTTGCACCAAACTACACTG 4172
| | || || |||||||||||||||| || ||||||||||| | | ||| | ||||
Sbjct 3921446 TGGTCTGTGAAAATAATGCACCTGGTCAAATATTTGTAAAACTTACTGCTAACCATACTG 3921387
Query 4173 AT 4174
||
Sbjct 3921386 AT 3921385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14648586865710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |