Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_028650.1
Length=4634
Score E
Sequences producing significant alignments: (Bits) Value
seq19 224 3e-55
>seq19
Length=25318236
Score = 224 bits (248), Expect = 3e-55
Identities = 370/525 (70%), Gaps = 8/525 (2%)
Strand=Plus/Minus
Query 1298 GAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAG 1357
||||||| | ||| | || | | ||||||||||||||||| || || || || |||||
Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051
Query 1358 AAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAAT 1417
||| || || |||| ||| |||||||||| || ||| | |||||||||||||
Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991
Query 1418 AGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTAAACTTTCCATTCA 1476
|||||| |||||||||| | || |||||||| | ||| ||||| || |||||||| |
Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAA-TCCAGCAAATGTTAATTTTCCATTTA 3923932
Query 1477 ATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAG 1536
||| | || || ||||| |||||||| | |||||| | ||| |||||| ||||
Sbjct 3923931 ATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAG 3923874
Query 1537 TAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAG 1596
|||| ||||| ||| || || ||| || || | | || ||| |||| ||||
Sbjct 3923873 TAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAG 3923814
Query 1597 GCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGG 1656
| ||||| | |||||||| || |||| ||||| |||| |||| | || ||| |
Sbjct 3923813 GATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAA 3923754
Query 1657 TCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGTATAC 1716
| || || | ||| | ||||| || || | |||||||| | |||||||| |||
Sbjct 3923753 TAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAA 3923694
Query 1717 AAATACGCTTAACCACAAGACTT-CCTGGAGACTTTGGTTTACTTAATAATGGAGAAATT 1775
| || | | | |||| | || ||| |||||||||||||||| |||| ||||||
Sbjct 3923693 ACTTATACATGA-GACAAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAATA 3923635
Query 1776 CCAAGCAT-CTTCAGAAGACTAGAAAGAAAAGGCTACAAACCAAC 1819
||| ||| ||||| | | | || | | ||| ||||| |||||
Sbjct 3923634 CCAGACATATTTCAGTACA-TGGACAAAGCAGGATACAAGCCAAC 3923591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14715782218305
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |