Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq19 224 3e-55 >seq19 Length=25318236 Score = 224 bits (248), Expect = 3e-55 Identities = 370/525 (70%), Gaps = 8/525 (2%) Strand=Plus/Minus Query 1298 GAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAG 1357 ||||||| | ||| | || | | ||||||||||||||||| || || || || ||||| Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051 Query 1358 AAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAAT 1417 ||| || || |||| ||| |||||||||| || ||| | ||||||||||||| Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991 Query 1418 AGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTAAACTTTCCATTCA 1476 |||||| |||||||||| | || |||||||| | ||| ||||| || |||||||| | Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAA-TCCAGCAAATGTTAATTTTCCATTTA 3923932 Query 1477 ATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAG 1536 ||| | || || ||||| |||||||| | |||||| | ||| |||||| |||| Sbjct 3923931 ATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAG 3923874 Query 1537 TAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAG 1596 |||| ||||| ||| || || ||| || || | | || ||| |||| |||| Sbjct 3923873 TAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAG 3923814 Query 1597 GCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGG 1656 | ||||| | |||||||| || |||| ||||| |||| |||| | || ||| | Sbjct 3923813 GATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAA 3923754 Query 1657 TCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGTATAC 1716 | || || | ||| | ||||| || || | |||||||| | |||||||| ||| Sbjct 3923753 TAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAA 3923694 Query 1717 AAATACGCTTAACCACAAGACTT-CCTGGAGACTTTGGTTTACTTAATAATGGAGAAATT 1775 | || | | | |||| | || ||| |||||||||||||||| |||| |||||| Sbjct 3923693 ACTTATACATGA-GACAAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAATA 3923635 Query 1776 CCAAGCAT-CTTCAGAAGACTAGAAAGAAAAGGCTACAAACCAAC 1819 ||| ||| ||||| | | | || | | ||| ||||| ||||| Sbjct 3923634 CCAGACATATTTCAGTACA-TGGACAAAGCAGGATACAAGCCAAC 3923591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14715782218305