Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq19 235 2e-58 >seq19 Length=25318236 Score = 235 bits (260), Expect = 2e-58 Identities = 346/489 (71%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 1155 GAATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAG 1214 ||||||||| ||| | | | | || ||||||||||| || || ||||| |||||||| Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051 Query 1215 AAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAAT 1274 ||| || || |||| ||| | ||||| ||||| ||| || |||||||||||||| Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991 Query 1275 ATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAA 1334 | ||| | ||||| | |||| ||||||||| | ||||||| || ||||| || || Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATTTAA 3923931 Query 1335 TGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGT 1394 || || | || |||||| |||| ||||| |||||| || || |||||| ||||| Sbjct 3923930 TGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAGT 3923873 Query 1395 AAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGG 1454 ||| ||||| ||| || || |||| || || | |||| ||| |||||||||| Sbjct 3923872 AAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAGG 3923813 Query 1455 CAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGT 1514 ||| || ||||||| || | |||||||| |||| |||| | ||||| || | Sbjct 3923812 ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAAT 3923753 Query 1515 AATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGTAAG 1574 || | || |||||| | | |||||| || | ||||| |||| |||||||| ||| Sbjct 3923752 AAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAAA 3923693 Query 1575 AATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAATCCC 1634 || | | | | ||| | | | |||||||||||||| ||| || ||||| || Sbjct 3923692 CTTATACATGAGACAAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAATACC 3923633 Query 1635 AGACATATT 1643 ||||||||| Sbjct 3923632 AGACATATT 3923624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15134953227350