Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_029797.1
Length=4765
Score E
Sequences producing significant alignments: (Bits) Value
seq19 235 2e-58
>seq19
Length=25318236
Score = 235 bits (260), Expect = 2e-58
Identities = 346/489 (71%), Gaps = 2/489 (0%)
Strand=Plus/Minus
Query 1155 GAATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAG 1214
||||||||| ||| | | | | || ||||||||||| || || ||||| ||||||||
Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGTCTAAATAAGCAAATAGGCAAAAG 3924051
Query 1215 AAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAAT 1274
||| || || |||| ||| | ||||| ||||| ||| || ||||||||||||||
Sbjct 3924050 AAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAAAAT 3923991
Query 1275 ATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAA 1334
| ||| | ||||| | |||| ||||||||| | ||||||| || ||||| || ||
Sbjct 3923990 AGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATTTAA 3923931
Query 1335 TGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGT 1394
|| || | || |||||| |||| ||||| |||||| || || |||||| |||||
Sbjct 3923930 TGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACAAGT 3923873
Query 1395 AAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGG 1454
||| ||||| ||| || || |||| || || | |||| ||| ||||||||||
Sbjct 3923872 AAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAAAGG 3923813
Query 1455 CAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGT 1514
||| || ||||||| || | |||||||| |||| |||| | ||||| || |
Sbjct 3923812 ATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGAAAT 3923753
Query 1515 AATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGTAAG 1574
|| | || |||||| | | |||||| || | ||||| |||| |||||||| |||
Sbjct 3923752 AAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATGCATAAA 3923693
Query 1575 AATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAATCCC 1634
|| | | | | ||| | | | |||||||||||||| ||| || ||||| ||
Sbjct 3923692 CTTATACATGAGACAAAAATTGGATGGTGACTTTGGTTTACTTAGTAATTCAGAAATACC 3923633
Query 1635 AGACATATT 1643
|||||||||
Sbjct 3923632 AGACATATT 3923624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15134953227350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |