Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_030837.1
Length=4639
Score E
Sequences producing significant alignments: (Bits) Value
seq19 221 4e-54
>seq19
Length=25318236
Score = 221 bits (244), Expect = 4e-54
Identities = 334/472 (71%), Gaps = 20/472 (4%)
Strand=Plus/Minus
Query 1248 GAATCCATACAAA---GTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAA 1304
||||||||| ||| |||||| | ||| ||||| || || || ||| |||||||
Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGT---CTAAATAAGCAAATAGGCAA 3924054
Query 1305 ACGAAACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGA 1364
| |||| || ||| ||||| |||| | |||||||| || ||| || |||||||| |
Sbjct 3924053 AAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAA 3923994
Query 1365 AATAGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATT 1424
|||||| || ||||||| | |||| ||||| ||| |||||||| || ||||||||
Sbjct 3923993 AATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATT 3923934
Query 1425 CAATGACTGTAGCAACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACA 1484
|||| || || || ||||| |||| ||||| |||||| || || ||||| |||
Sbjct 3923933 TAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACA 3923876
Query 1485 AGTAAACCAATTTAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAA 1544
|||||| ||||||||| ||||| |||| | || | | || ||| |||| ||
Sbjct 3923875 AGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAA 3923816
Query 1545 AGGCAGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAG 1604
||| ||| ||| ||||||||| || | || ||||| || | |||| |||| ||
Sbjct 3923815 AGGATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGA 3923756
Query 1605 AGTCATGGTTGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGT 1664
| | | ||||||| |||| ||| |||||| || | ||||| || | ||||||||
Sbjct 3923755 AATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATG--- 3923699
Query 1665 CAGAATCTATCTAAACAATAGACTAAA------TGGTGACTTTGGTTTGCTT 1710
|| || || || ||| |||| ||| ||||||||||||||| |||
Sbjct 3923698 CATAAACT---TATACATGAGACAAAAATTGGATGGTGACTTTGGTTTACTT 3923650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14731781111780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |