Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq19 221 4e-54 >seq19 Length=25318236 Score = 221 bits (244), Expect = 4e-54 Identities = 334/472 (71%), Gaps = 20/472 (4%) Strand=Plus/Minus Query 1248 GAATCCATACAAA---GTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAA 1304 ||||||||| ||| |||||| | ||| ||||| || || || ||| ||||||| Sbjct 3924110 GAATCCATATAAAATTGTTTACACTATTATGTGCTGT---CTAAATAAGCAAATAGGCAA 3924054 Query 1305 ACGAAACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGA 1364 | |||| || ||| ||||| |||| | |||||||| || ||| || |||||||| | Sbjct 3924053 AAGAAATACTATCTTACTACATGGATCAGCAAGTACTGGGAAATCTCTCATAGCACAAAA 3923994 Query 1365 AATAGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATT 1424 |||||| || ||||||| | |||| ||||| ||| |||||||| || |||||||| Sbjct 3923993 AATAGCTCAATTAGTTGGAATCATTGGCTGCTACAATCCAGCAAATGTTAATTTTCCATT 3923934 Query 1425 CAATGACTGTAGCAACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACA 1484 |||| || || || ||||| |||| ||||| |||||| || || ||||| ||| Sbjct 3923933 TAATGGCTATACAAATAAAAATTTAATATGGGTTGAAGAA--TGAAAATTTTGGACAACA 3923876 Query 1485 AGTAAACCAATTTAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAA 1544 |||||| ||||||||| ||||| |||| | || | | || ||| |||| || Sbjct 3923875 AGTAAATCAATTTAAATATATTATATCTGGCAAAACAGTGCACTTTGAACAATAAGGAAA 3923816 Query 1545 AGGCAGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAG 1604 ||| ||| ||| ||||||||| || | || ||||| || | |||| |||| || Sbjct 3923815 AGGATCAAAAACAACTGAACCAACACCTATAATAATGACAACAAGTGAAAATATAACTGA 3923756 Query 1605 AGTCATGGTTGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGT 1664 | | | ||||||| |||| ||| |||||| || | ||||| || | |||||||| Sbjct 3923755 AATAAGAGTTGGTTGTGAATTAAGACCAGAGCATACTCAACCAATAAAAGACAGATG--- 3923699 Query 1665 CAGAATCTATCTAAACAATAGACTAAA------TGGTGACTTTGGTTTGCTT 1710 || || || || ||| |||| ||| ||||||||||||||| ||| Sbjct 3923698 CATAAACT---TATACATGAGACAAAAATTGGATGGTGACTTTGGTTTACTT 3923650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14731781111780