Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_032097.1
Length=4284
Score E
Sequences producing significant alignments: (Bits) Value
seq2672 1103 0.0
>seq2672
Length=6111
Score = 1103 bits (1222), Expect = 0.0
Identities = 1929/2760 (70%), Gaps = 107/2760 (4%)
Strand=Plus/Plus
Query 1187 ATGATTTAGGAGAACGTTTTAGAGCACGACAGGAAATCGAACGTATCAAAAAAGGA-GAT 1245
|||||| ||| | | || |||| ||| ||||| ||| | ||||||||| | |||
Sbjct 5 ATGATTGGGGACAGAGATTCAGAGATAAACAAGAAATAGAAAG-ATCAAAAAAAAATGAT 63
Query 1246 CCTAATACAGCTCAA--ATGCACACTATTACAGCTGAAATAACTGATGTAATCATGAACC 1303
|| | ||| |||| ||||||||||| ||||||||||| || || | |||||| | |
Sbjct 64 CCCACAACA--TCAACCATGCACACTATCACAGCTGAAATCACAGAAATCATCATGCAAC 121
Query 1304 ACAATTGTAGATCAGTAGAAGATTGTATGAGAGCAGCACCTGACATCATCGCAAAACACT 1363
|||| || | ||| | |||||||| |||| ||| |||||| ||||| || ||||| |
Sbjct 122 ACAACTGCAAATCCATTGAAGATTGCATGAAAGCCGCACCTAGTATCATTGCTAAACATT 181
Query 1364 TACATAGAGCTGGATTAGCAACAATCATACAAAACTGTATTGCTTGGGTAACATCTACAG 1423
|||| ||||| ||||||| ||| || || ||||| |||||| ||||| || |||| |
Sbjct 182 TACACAGAGCAGGATTAGGAACTATTATTCAAAATTGTATTAGCTGGGTCACTGCTACTG 241
Query 1424 GAGGAGGATGGTCCATGCAAAACATCAATGCTAAATACCCAGCACATCCAGATTACATTC 1483
||||||| ||||| | | || |||| | |||||||| || | |||| || |||
Sbjct 242 GAGGAGGTTGGTCATTACCAACCATCCGTTCTAAATACACACCCAATCCTGAAACGGTTC 301
Query 1484 ACTTATGTCTCATACATCAAGGCATAACACCACAATTATTTGATCCAATATTTTATCAAT 1543
|| | |||| | ||||||||||| ||||| |||||||| || || ||| |||
Sbjct 302 ACAAAGTTCTCCTTCATCAAGGCATTCCACCATCTGAATTTGATCATATCTTCTATGAAT 361
Query 1544 GGGTCACAAAAGCCAATCTCaaaaaaaaTACATTAGTACTATGGGGTCCTACAAATACAG 1603
|| | |||||| || ||||||||||| ||||||| ||||| || | ||||| |
Sbjct 362 GGATAACAAAACAGAACACTAAAAAAAATACCATAGTACTCTGGGGACCAAGCAATACCG 421
Query 1604 GAAAAAGTGCATTCATCTCAGGATTTAAACAATGCATTAATTGGGGAGAAGTAGTAAATA 1663
||||||| || |||||| || ||||| ||| || || ||||||||| | ||||||
Sbjct 422 GAAAAAGCGCTTTCATCAGCGGTCTTAAAACATGTATCAACTGGGGAGAAATCGTAAATT 481
Query 1664 GCAACACATTTGCTTTTGAAGGACTCATCAATAATCAATTCGGTATTTGGGAAGAACCAT 1723
|| |||||||| ||||||||||| || |||| ||| | || ||||||||||||||||
Sbjct 482 CTAATACATTTGCCTTTGAAGGACTTATAAATACACAACTTGGCATTTGGGAAGAACCAT 541
Query 1724 TAATCTCACCAGAATTAGCAGAAAAAGCTAAACAAGTATTTGAAGGCATGGAAACTTCCA 1783
|||| || || |||||||| ||||| ||||||||| |||| || |||||||||||||| |
Sbjct 542 TAATTTCTCCCGAATTAGCTGAAAAGGCTAAACAAATATTCGAGGGCATGGAAACTTCTA 601
Query 1784 TTCCTGTCAAATACAGGAAACCAGTAAAATTACCACGCACACCCATCATAATAACTACAA 1843
|||| || ||||| || ||||| | ||||||||||||| ||||| || || || || |
Sbjct 602 TTCCAGTTAAATATAGAAAACCTATCAAATTACCACGCATTCCCATTATTATCACAACCA 661
Query 1844 ATCATGCTCCCTGGAGATTTTGCACTAAAGAAGAAGAAATGTTTAAAAATAGAATGTTTA 1903
||||| |||||||| | |||||||||||||||||||| ||||| | ||| | |||| ||
Sbjct 662 ATCATCCTCCCTGGCGCTTTTGCACTAAAGAAGAAGACATGTTCAGAAACCGCATGTATA 721
Query 1904 TTTTTAACTGGAACCATAACATGCATAACACCACTTTCACTTACAGAGTTAGTGAATATA 1963
| ||| |||| || || ||||| | || ||||| || |||| ||||||| |||
Sbjct 722 TCTTTTCCTGGTCTCACAATATGCACGAAACACCTTTCTTTTGCAGAACTAGTGAACATA 781
Query 1964 GCTGCGAATGCCGAATTTGTAAAACAAGTCGAAGCAGCGAGACTACTACTAGTGGGGGAA 2023
||||| ||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |
Sbjct 782 GCTGCCAATGCCGCCTTTGTCAAACAAGTCGAGGCAGCCAGACTGATACTAGTGGGGAAC 841
Query 2024 CAACTAGCAGCTTGCCGGGAGGAGAACAACCCATACAACAACTGGTTC--CAACAACCCT 2081
||||||||||| ||||||||| |||||||||| | || |||||| ||| |
Sbjct 842 CAACTAGCAGCATGCCGGGAGAGAAACAACCCATTTCAGAATTGGTTCAGTCTCAATC-- 899
Query 2082 CACGACAAGCAATGTTCCAACCAGATCCATGTCTCCACCTAGAGAAAGAGAAAT-GGGAA 2140
|||| ||||| ||||||||||||||||| |||||| | |||||| |||| | || |
Sbjct 900 CACGCCAAGCTATGTTCCAACCAGATCCCTGTCTCTATCTAGAG-AAGAAACATCATTAT 958
Query 2141 CTAGAACAGAGGCAGAAAGAGAGGGAACAACAACAACACTTAGCAGGAGCAACAGTGGAA 2200
||| |||||| || || |||| | ||||| |||| | | |
Sbjct 959 CTACAACAGA-----AACTAGCGGGAGCGACAAC------------GAGCGATATCG--- 998
Query 2201 CAACTACCCAGTACACAGATACAGAGCAGGAG---CAATGCTCCGACAGCTCAAGATCTA 2257
|| |||| || ||| ||||| | ||| || |||||||| ||||| |||
Sbjct 999 ---CT--GCAGTCCA-----ACAAAGCAGCCGCTCCAACGCCCCGACAGCCCAAGACCTA 1048
Query 2258 GCAGCAGCTCCAGCACCACAACTCCACACAGCATACGATCCGGTGGGGAATACAGATCCA 2317
|| |||||||||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 1049 GCTGCAGCTCCAGCACCACAACTAGCGACAGCATACGATCCGATAGGGAATACAGACCCG 1108
Query 2318 GCCATACCA-CAGAGCGAGATGGAGGTACAAGTAGCGGGAGCTCAAAACGTTTGGGAACC 2376
|| || ||| | || | || | || ||||| | | | | | | ||| |
Sbjct 1109 GCTATTCCAGAACAGGAATAT-CACACACCTTCCCCGGGATCCCTGAGCATCT-GGAGTC 1166
Query 2377 CGCAGAC-CTAGACGAGATTATG-GTA-GATATCTTAGAAA---TGATGGACATCCCTCA 2430
| | | ||||| || | ||| || |||| || || || |||| | |||
Sbjct 1167 CTCTTTCACTAGAGGAAACAATGAATATGATAGCTCAGGAACTCGAATGGGAACGCCTAC 1226
Query 2431 ATACTCACCCACACTCCAACAGCAGATCATTGC-TATATTAGACGACCTATACGAAAACG 2489
| || || | | ||| ||| | ||| | || | | ||| | | |||||||
Sbjct 1227 AAACACA-----AATAACACAACAGGT-ATTACAGATCCTCCAAGACTTGGAGGAAAACG 1280
Query 2490 CAAAACTAGCCAAGAAGTGGTGGTGTTGGGGAAAAC-CAAAACACAAAAGACATGGCCTG 2548
|| |||| ||||| ||||||| ||||| |||| |||||| |||| ||| ||| |
Sbjct 1281 CAGCCATAGCGAAGAAATGGTGGTCATGGGGGAAACGGAAAACA-AAAAAACACGGCATT 1339
Query 2549 AAATTCCAACCACCGAACCTAGATTGGATAGGGAAATGGGCTCCTTAACTATACCAACAC 2608
||||||||||| | || ||| | |||| ||||| |||| ||||| || ||||
Sbjct 1340 CGTTTCCAACCACCATCACAAGCATGGGTGGGGATCTGGGCACCTTGACTATTCCTACAC 1399
Query 2609 GCTTACAATGGTATATGTATCTCTCCTACCTACAGACAAAATATGGCTGAAGATGTCAGC 2668
||||||||||| | |||||||| || ||||| | ||||||||||||||| |||
Sbjct 1400 GCTTACAATGGCTTGCTTATCTCTCTTATTTACAGCAACAATATGGCTGAAGATATCACT 1459
Query 2669 TACACTAACACCTACATGGCATATTGGAAAAATGGACCTTACATCTATCCTAACAATGAC 2728
|| ||| || ||||||| |||||| ||| |||||| ||||| || |||| |
Sbjct 1460 TATCATAATACTTACATGGTCTATTGGGGCAATCAACCTTATATCTACCCCAACACACAA 1519
Query 2729 ACTGATCCTAAAAGCAAAACAGGACAAGTTATGTCCACAGGAGAAATCAACACCGGATGG 2788
| || || | | || | ||| ||| | |||| || || |||||||||
Sbjct 1520 AATGCACC----ACCTAA--TGCACATACAATGACAGCAGGTACTATAAATACCGGATGG 1573
Query 2789 CATATAATACCAACTATACTATGGAAACACTTCACTACTCCCAAACAATGGTGTA-ATTT 2847
|| | ||||| || || ||||||||||||| || || | ||||||| ||| | |
Sbjct 1574 CACGTCATACCTACCATGTTATGGAAACACTTTCTCACACCAAGACAATGG-GTAGAACT 1632
Query 2848 CATGATTAAATATGAAGCTTATACAGTAAAAGGATACACTGTCACTGTATATAATCCTAT 2907
|| || || || ||||| ||||| ||||||||||| || |||| |||||||||||||
Sbjct 1633 CACCATCAATTACGAAGCATATACTGTAAAAGGATATTCTTGCACTCTATATAATCCTAT 1692
Query 2908 ACCTATGACACAACAACTCGCTATTCAAGGCACCACAGCATTTACAGCATTTAATAACAC 2967
||| ||||| |||||| | ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 1693 ACCAATGACTCAACAATTAGCTATCCAAGGCACCACTGCATTTACAGCCTTTAACAACAC 1752
Query 2968 CATATATACATTAGGAGCACAAGACGATATATACGAAACTAGTTATCATAACTGGT--AT 3025
||||| ||| ||||||||||||||||| |||| ||||| |||||| ||||||| |
Sbjct 1753 AATATACACACTAGGAGCACAAGACGATCTATATGAAACCTCTTATCACAACTGGTGGAG 1812
Query 3026 TTAGAC-ACACCA-------TTCAATCACTTTAACCTCGCATATAAAGAGGGACAATATA 3077
| | || ||| || || || || || || || ||| ||||| |||||||| |
Sbjct 1813 TGACACTACAACAGGAGAATTTAAAACA-TTCAATCTATCATTCAAAGAAGGACAATACA 1871
Query 3078 AAGATAACAATAACTCATGGAATAAAACAGTATTTCCAGTATA-CTCATGGCGCACCGCA 3136
|| ||| || | | ||| ||||| || ||||| || ||| |||| ||| | |
Sbjct 1872 AAAATACAGATGGCGCCTGGCGAAAAACCAAATGGCCAGTTTATCTC-TGGCACACAGAA 1930
Query 3137 AATCCACGCAATGTTAGTGACACCACATATTCATATATACCTACT-GTA-CTA-AGCTAC 3193
|| | || | | | |||| || || | || | | ||| | | || ||
Sbjct 1931 AACGTCAGAAACGCTTCAGCTTCCACTTACTC---TCAACTCATTGGTATCGATAGTTAT 1987
Query 3194 TCTACATGGCCACGCG---TCGCTAATGAATCAGATATACCCAATGGACTCTTCTGGGAC 3250
|| |||||||| | | || |||| || | || | ||| | || |||||
Sbjct 1988 AGCACCTGGCCACGAGAAAGAGACAAAGAATTAG---TCCCAACTGGTGTTTTTTGGGAT 2044
Query 3251 CCACTAACTGATCCAGATAGCATCATGGAATTAAGACCCGGAAAAAACAGTATGTCATTT 3310
|| ||| ||| | || ||||| | ||| | ||||| |||||||| ||||||||
Sbjct 2045 CCCTTAAACGATGCTAATGGCATCTTAGAACTCAGACCTGGAAAAAATTCAATGTCATTC 2104
Query 3311 TCCTGGAATGCTCATGATTGTGATACTAATAAATGGTATAATTTAGATTGCATCGCAAAA 3370
|| |||| || ||||||| |||||||||| |||| | ||| ||||| |||
Sbjct 2105 TCTTGGACACAACACCCTTGTGATGAAAATAAATGGTTTAATATCGATCAAATCGCTAAA 2164
Query 3371 TGGACTCCATATGTTCATGACAATCCAT-TCCAACACATAGGAAGAGCAGGTCAAGCAGG 3429
||| ||| ||| || ||||||| | | |||| || | |||| | ||||
Sbjct 2165 TGGTTTCCTTATACCGTCGATAATCCATATGAACCACA-CCAAACATATGGTCCACCAGG 2223
Query 3430 ATCATACAAAAT-TACCACCACCGACGACCCAGATCCATTATCAACATACTCATCATGGG 3488
|||||||| | || | | || || || || | | || || | || |||
Sbjct 2224 TACATACAAACTATATGGCGA-AGATGATCCTGACGAACTCACATCAGATAGTTCCTGG- 2281
Query 3489 CAACAACAGAACTCACCAAAGATGACTTTACCATACCAAACCTATTAAACATGCCAGTTG 3548
|| ||| | | |||| ||||| |||||| || ||||| ||| | ||||| | |
Sbjct 2282 --ACCACATATAGTAACAAAAATGACCCTACCATCCCTAACCTCTTAGAAATGCCTATAG 2339
Query 3549 TGCCCATGAACTGGTGGTGGCAAGAAATGCAGAAATCAATAG-CACAAACAACCA-CCCT 3606
| || ||| | |||| |||||||||||||| ||||| || | | | | ||| |
Sbjct 2340 TACCTATGCAATGGTTCTGGCAAGAAATGCAAAAATCTATCGTTTCCATC--CCAGAAAT 2397
Query 3607 TAAAAAACCTGCATTATTCTGGGCAGGCACCGAATATGAACAATACAAATATCCACCCAC 3666
||||||||| ||| ||||| || |||||||||||| || ||||| ||||||
Sbjct 2398 CAAAAAACCTCTCTTACATTGGGCCGGAACCGAATATGAATGCTATAAATACGGACCCAC 2457
Query 3667 ACAATGCTTTCTTAAAGGTGTACCATTATTCGACGACAATGGCACACACGTAGAAACACT 3726
|||||| || | ||||| | || | || || ||||||| |||||| |||| ||
Sbjct 2458 ACAATGTTTCATCAAAGGCATTCCTCTCTTTGATGACAATGACACACATGTAGCCACCAC 2517
Query 3727 CACTCAAGGATGCTTCAGAGTCACACTACACCTAGCAGCCAAGAAACGAAGAAGCAGAAT 3786
|| ||||| ||||| | ||| |||||||| || | ||| ||| || | ||| | ||
Sbjct 2518 AACACAAGGCTGCTTTCGCATCAGCCTACACCTCGCCGTCAAAAAAAGACGCAGCCGCAT 2577
Query 3787 ATTCGCTCCAACATGGGGACCACTAGCATGGACACAAATATACTCAATTGACGCACCAAG 3846
| ||| || |||||||| || || | |||| |||||| || | | ||| |||||
Sbjct 2578 CTACGCACCTACATGGGGTCCTCTTTCCTGGAGACAAATCTATGCTACAGACACACCATA 2637
Query 3847 AGCACCAAATGCAGTCAGATATAGAACAGGAGGAGCAAGAAGAACATGGACAAACATCGA 3906
|||| | |||| | || ||||||||||||||| ||||||||||||| || |||||
Sbjct 2638 CATACCATCTCTAGTCCGTTACAGAACAGGAGGAGCACGAAGAACATGGACCAATATCGA 2697
Score = 282 bits (312), Expect = 1e-72
Identities = 499/722 (69%), Gaps = 14/722 (2%)
Strand=Plus/Minus
Query 438 AAGATGCTGTCTGTTTACTACAACACAGATGGCAAATGGAATTTGAAACCaaaaaaaTTG 497
||||||||||||| | ||| || | ||||| || ||||||||| | | | | ||
Sbjct 5622 AAGATGCTGTCTGCCTTCTAGCTAACCGTTGGCATATTGAATTTGAAGCTAGAGAGCATG 5563
Query 498 ATAATACCTGGTATGCCTGGGGACGCCAAAAACGCTTCACAGTAGGAGACCTAACAATTC 557
| | ||||| || ||||| |||| ||||||||||| | ||| ||| |||
Sbjct 5562 AGGGTGTGTGGTACGCGTGGGGCAAACAAAGTCGCTTCACAGTGGCAGAAACCACACTTC 5503
Query 558 AAAGAGCCCTGGGTGATCTGTTCACAGAGGAGCTGATAATCTTCCAGAGAGGTGCTCCGG 617
||||||| || |||||||| | || ||| | || | ||| |||| || | || |
Sbjct 5502 AAAGAGCTCTTGGTGATCTCTATTCACAGGGTTTCATCACCTTTCAGAAGGGACCACCTG 5443
Query 618 ACGATTCCTTTGACAGCGCCTTACGCTACCAACAATGCAAGCGCAAGTGGAACGTCCCCG 677
|| ||||||||||||||| ||||||||||| ||||||||||||| |||||||| || |
Sbjct 5442 ACACTTCCTTTGACAGCGCTCTACGCTACCAAAAATGCAAGCGCAAATGGAACGTGCCAG 5383
Query 678 AGCAAGTCTCTCTGAGCTCCGAAGATACTGGTGGAACGGCCACACCTGCTTGGTACAT-- 735
| |||||||| || |||||||| |||||| || | |||| | || |
Sbjct 5382 ACGTAGTCTCTCAACCCTGCGAAGATATTGGTGGGGGGGGAATGCCTGTCATGAACTTTC 5323
Query 736 -GAAGAAGAAAAAACCTTAGATCTCCAATCACT---ACAAACCATCCTAAATACCTGGGA 791
||||||| |||| ||||||| | | || |||| ||| |||| ||||||
Sbjct 5322 GGAAGAAGGGAAAATCTTAGATACAGATACCCTAAAACAAGTCATGTTAAA---CTGGGA 5266
Query 792 CTCACGTGTATGGCAAGCATGTGTATTAGCTATATGGGATGATGCATTACCTGTACAAGA 851
|| || |||||||||| |||||||| | ||| ||| ||| || |||| | | ||
Sbjct 5265 TTCTCGCATATGGCAAGCTTGTGTATTGGGTATTTGG---GATACAGCACCTATTCGTGA 5209
Query 852 TCCTAGACCATATGCTTTTTTAATGTCTTCTATTCCATCTGTAAAAATGTGGTTTTTATG 911
||| |||| ||| || | | | | || || ||||| |||| ||||| | ||
Sbjct 5208 TCCACGACCTTATTGTTGTCTGTTAAATACTGTTAATTCTGTTAAAAAATGGTTAATCTG 5149
Query 912 TGCTGAAAATGATTCTAATGGAAATATGCATATACATTTATTAGCTCTAACACCACAAAG 971
||| ||| ||||| ||||| | | | ||| ||||| | |||||||| || ||||| |
Sbjct 5148 TGCAGAAGATGATAGTAATGAACAAACTCATGTACATGTTTTAGCTCTCACCTCACAACG 5089
Query 972 ATCTGATAGTTTCAAACGTACCTTAGAACGAATATGGAAGGATGTTGCAATTGTTGCTAT 1031
|||||| || ||||| ||||||||| || ||| | | || |||| || |
Sbjct 5088 TTCTGATGCCTTTAAACGCACCTTAGAAAAAACTTGGCCACAAATCGCTCTTGTAGCATT 5029
Query 1032 GTCTGATATAGAAATGCCTGATCCTACCTTAGAAGTTGTTAAATGTCAAAAATGTCACAA 1091
||||| ||| ||||||||| | | ||| ||||||||||||||||||| || ||
Sbjct 5028 ACAAGATATTGAAGAACCTGATCCTGTCCTTGAAATTGTTAAATGTCAAAAATGCCATAA 4969
Query 1092 ACCTAGTAGTTTAATCAGC-TATATGGTTAAAGATCCCATTTGGATAGCAGCTAGTGATT 1150
||| |||||| | | ||| || ||| ||||||||| ||||| || || | |||||
Sbjct 4968 ACCCAGTAGTCT-TTTAGCATACATGACTAAAGATCCACACTGGATTGCTGCCAATGATT 4910
Query 1151 TA 1152
||
Sbjct 4909 TA 4908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 13595735795460
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