Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_032097.1 Length=4284 Score E Sequences producing significant alignments: (Bits) Value seq2672 1103 0.0 >seq2672 Length=6111 Score = 1103 bits (1222), Expect = 0.0 Identities = 1929/2760 (70%), Gaps = 107/2760 (4%) Strand=Plus/Plus Query 1187 ATGATTTAGGAGAACGTTTTAGAGCACGACAGGAAATCGAACGTATCAAAAAAGGA-GAT 1245 |||||| ||| | | || |||| ||| ||||| ||| | ||||||||| | ||| Sbjct 5 ATGATTGGGGACAGAGATTCAGAGATAAACAAGAAATAGAAAG-ATCAAAAAAAAATGAT 63 Query 1246 CCTAATACAGCTCAA--ATGCACACTATTACAGCTGAAATAACTGATGTAATCATGAACC 1303 || | ||| |||| ||||||||||| ||||||||||| || || | |||||| | | Sbjct 64 CCCACAACA--TCAACCATGCACACTATCACAGCTGAAATCACAGAAATCATCATGCAAC 121 Query 1304 ACAATTGTAGATCAGTAGAAGATTGTATGAGAGCAGCACCTGACATCATCGCAAAACACT 1363 |||| || | ||| | |||||||| |||| ||| |||||| ||||| || ||||| | Sbjct 122 ACAACTGCAAATCCATTGAAGATTGCATGAAAGCCGCACCTAGTATCATTGCTAAACATT 181 Query 1364 TACATAGAGCTGGATTAGCAACAATCATACAAAACTGTATTGCTTGGGTAACATCTACAG 1423 |||| ||||| ||||||| ||| || || ||||| |||||| ||||| || |||| | Sbjct 182 TACACAGAGCAGGATTAGGAACTATTATTCAAAATTGTATTAGCTGGGTCACTGCTACTG 241 Query 1424 GAGGAGGATGGTCCATGCAAAACATCAATGCTAAATACCCAGCACATCCAGATTACATTC 1483 ||||||| ||||| | | || |||| | |||||||| || | |||| || ||| Sbjct 242 GAGGAGGTTGGTCATTACCAACCATCCGTTCTAAATACACACCCAATCCTGAAACGGTTC 301 Query 1484 ACTTATGTCTCATACATCAAGGCATAACACCACAATTATTTGATCCAATATTTTATCAAT 1543 || | |||| | ||||||||||| ||||| |||||||| || || ||| ||| Sbjct 302 ACAAAGTTCTCCTTCATCAAGGCATTCCACCATCTGAATTTGATCATATCTTCTATGAAT 361 Query 1544 GGGTCACAAAAGCCAATCTCaaaaaaaaTACATTAGTACTATGGGGTCCTACAAATACAG 1603 || | |||||| || ||||||||||| ||||||| ||||| || | ||||| | Sbjct 362 GGATAACAAAACAGAACACTAAAAAAAATACCATAGTACTCTGGGGACCAAGCAATACCG 421 Query 1604 GAAAAAGTGCATTCATCTCAGGATTTAAACAATGCATTAATTGGGGAGAAGTAGTAAATA 1663 ||||||| || |||||| || ||||| ||| || || ||||||||| | |||||| Sbjct 422 GAAAAAGCGCTTTCATCAGCGGTCTTAAAACATGTATCAACTGGGGAGAAATCGTAAATT 481 Query 1664 GCAACACATTTGCTTTTGAAGGACTCATCAATAATCAATTCGGTATTTGGGAAGAACCAT 1723 || |||||||| ||||||||||| || |||| ||| | || |||||||||||||||| Sbjct 482 CTAATACATTTGCCTTTGAAGGACTTATAAATACACAACTTGGCATTTGGGAAGAACCAT 541 Query 1724 TAATCTCACCAGAATTAGCAGAAAAAGCTAAACAAGTATTTGAAGGCATGGAAACTTCCA 1783 |||| || || |||||||| ||||| ||||||||| |||| || |||||||||||||| | Sbjct 542 TAATTTCTCCCGAATTAGCTGAAAAGGCTAAACAAATATTCGAGGGCATGGAAACTTCTA 601 Query 1784 TTCCTGTCAAATACAGGAAACCAGTAAAATTACCACGCACACCCATCATAATAACTACAA 1843 |||| || ||||| || ||||| | ||||||||||||| ||||| || || || || | Sbjct 602 TTCCAGTTAAATATAGAAAACCTATCAAATTACCACGCATTCCCATTATTATCACAACCA 661 Query 1844 ATCATGCTCCCTGGAGATTTTGCACTAAAGAAGAAGAAATGTTTAAAAATAGAATGTTTA 1903 ||||| |||||||| | |||||||||||||||||||| ||||| | ||| | |||| || Sbjct 662 ATCATCCTCCCTGGCGCTTTTGCACTAAAGAAGAAGACATGTTCAGAAACCGCATGTATA 721 Query 1904 TTTTTAACTGGAACCATAACATGCATAACACCACTTTCACTTACAGAGTTAGTGAATATA 1963 | ||| |||| || || ||||| | || ||||| || |||| ||||||| ||| Sbjct 722 TCTTTTCCTGGTCTCACAATATGCACGAAACACCTTTCTTTTGCAGAACTAGTGAACATA 781 Query 1964 GCTGCGAATGCCGAATTTGTAAAACAAGTCGAAGCAGCGAGACTACTACTAGTGGGGGAA 2023 ||||| ||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| | Sbjct 782 GCTGCCAATGCCGCCTTTGTCAAACAAGTCGAGGCAGCCAGACTGATACTAGTGGGGAAC 841 Query 2024 CAACTAGCAGCTTGCCGGGAGGAGAACAACCCATACAACAACTGGTTC--CAACAACCCT 2081 ||||||||||| ||||||||| |||||||||| | || |||||| ||| | Sbjct 842 CAACTAGCAGCATGCCGGGAGAGAAACAACCCATTTCAGAATTGGTTCAGTCTCAATC-- 899 Query 2082 CACGACAAGCAATGTTCCAACCAGATCCATGTCTCCACCTAGAGAAAGAGAAAT-GGGAA 2140 |||| ||||| ||||||||||||||||| |||||| | |||||| |||| | || | Sbjct 900 CACGCCAAGCTATGTTCCAACCAGATCCCTGTCTCTATCTAGAG-AAGAAACATCATTAT 958 Query 2141 CTAGAACAGAGGCAGAAAGAGAGGGAACAACAACAACACTTAGCAGGAGCAACAGTGGAA 2200 ||| |||||| || || |||| | ||||| |||| | | | Sbjct 959 CTACAACAGA-----AACTAGCGGGAGCGACAAC------------GAGCGATATCG--- 998 Query 2201 CAACTACCCAGTACACAGATACAGAGCAGGAG---CAATGCTCCGACAGCTCAAGATCTA 2257 || |||| || ||| ||||| | ||| || |||||||| ||||| ||| Sbjct 999 ---CT--GCAGTCCA-----ACAAAGCAGCCGCTCCAACGCCCCGACAGCCCAAGACCTA 1048 Query 2258 GCAGCAGCTCCAGCACCACAACTCCACACAGCATACGATCCGGTGGGGAATACAGATCCA 2317 || |||||||||||||||||||| ||||||||||||||| | ||||||||||| || Sbjct 1049 GCTGCAGCTCCAGCACCACAACTAGCGACAGCATACGATCCGATAGGGAATACAGACCCG 1108 Query 2318 GCCATACCA-CAGAGCGAGATGGAGGTACAAGTAGCGGGAGCTCAAAACGTTTGGGAACC 2376 || || ||| | || | || | || ||||| | | | | | | ||| | Sbjct 1109 GCTATTCCAGAACAGGAATAT-CACACACCTTCCCCGGGATCCCTGAGCATCT-GGAGTC 1166 Query 2377 CGCAGAC-CTAGACGAGATTATG-GTA-GATATCTTAGAAA---TGATGGACATCCCTCA 2430 | | | ||||| || | ||| || |||| || || || |||| | ||| Sbjct 1167 CTCTTTCACTAGAGGAAACAATGAATATGATAGCTCAGGAACTCGAATGGGAACGCCTAC 1226 Query 2431 ATACTCACCCACACTCCAACAGCAGATCATTGC-TATATTAGACGACCTATACGAAAACG 2489 | || || | | ||| ||| | ||| | || | | ||| | | ||||||| Sbjct 1227 AAACACA-----AATAACACAACAGGT-ATTACAGATCCTCCAAGACTTGGAGGAAAACG 1280 Query 2490 CAAAACTAGCCAAGAAGTGGTGGTGTTGGGGAAAAC-CAAAACACAAAAGACATGGCCTG 2548 || |||| ||||| ||||||| ||||| |||| |||||| |||| ||| ||| | Sbjct 1281 CAGCCATAGCGAAGAAATGGTGGTCATGGGGGAAACGGAAAACA-AAAAAACACGGCATT 1339 Query 2549 AAATTCCAACCACCGAACCTAGATTGGATAGGGAAATGGGCTCCTTAACTATACCAACAC 2608 ||||||||||| | || ||| | |||| ||||| |||| ||||| || |||| Sbjct 1340 CGTTTCCAACCACCATCACAAGCATGGGTGGGGATCTGGGCACCTTGACTATTCCTACAC 1399 Query 2609 GCTTACAATGGTATATGTATCTCTCCTACCTACAGACAAAATATGGCTGAAGATGTCAGC 2668 ||||||||||| | |||||||| || ||||| | ||||||||||||||| ||| Sbjct 1400 GCTTACAATGGCTTGCTTATCTCTCTTATTTACAGCAACAATATGGCTGAAGATATCACT 1459 Query 2669 TACACTAACACCTACATGGCATATTGGAAAAATGGACCTTACATCTATCCTAACAATGAC 2728 || ||| || ||||||| |||||| ||| |||||| ||||| || |||| | Sbjct 1460 TATCATAATACTTACATGGTCTATTGGGGCAATCAACCTTATATCTACCCCAACACACAA 1519 Query 2729 ACTGATCCTAAAAGCAAAACAGGACAAGTTATGTCCACAGGAGAAATCAACACCGGATGG 2788 | || || | | || | ||| ||| | |||| || || ||||||||| Sbjct 1520 AATGCACC----ACCTAA--TGCACATACAATGACAGCAGGTACTATAAATACCGGATGG 1573 Query 2789 CATATAATACCAACTATACTATGGAAACACTTCACTACTCCCAAACAATGGTGTA-ATTT 2847 || | ||||| || || ||||||||||||| || || | ||||||| ||| | | Sbjct 1574 CACGTCATACCTACCATGTTATGGAAACACTTTCTCACACCAAGACAATGG-GTAGAACT 1632 Query 2848 CATGATTAAATATGAAGCTTATACAGTAAAAGGATACACTGTCACTGTATATAATCCTAT 2907 || || || || ||||| ||||| ||||||||||| || |||| ||||||||||||| Sbjct 1633 CACCATCAATTACGAAGCATATACTGTAAAAGGATATTCTTGCACTCTATATAATCCTAT 1692 Query 2908 ACCTATGACACAACAACTCGCTATTCAAGGCACCACAGCATTTACAGCATTTAATAACAC 2967 ||| ||||| |||||| | ||||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 1693 ACCAATGACTCAACAATTAGCTATCCAAGGCACCACTGCATTTACAGCCTTTAACAACAC 1752 Query 2968 CATATATACATTAGGAGCACAAGACGATATATACGAAACTAGTTATCATAACTGGT--AT 3025 ||||| ||| ||||||||||||||||| |||| ||||| |||||| ||||||| | Sbjct 1753 AATATACACACTAGGAGCACAAGACGATCTATATGAAACCTCTTATCACAACTGGTGGAG 1812 Query 3026 TTAGAC-ACACCA-------TTCAATCACTTTAACCTCGCATATAAAGAGGGACAATATA 3077 | | || ||| || || || || || || || ||| ||||| |||||||| | Sbjct 1813 TGACACTACAACAGGAGAATTTAAAACA-TTCAATCTATCATTCAAAGAAGGACAATACA 1871 Query 3078 AAGATAACAATAACTCATGGAATAAAACAGTATTTCCAGTATA-CTCATGGCGCACCGCA 3136 || ||| || | | ||| ||||| || ||||| || ||| |||| ||| | | Sbjct 1872 AAAATACAGATGGCGCCTGGCGAAAAACCAAATGGCCAGTTTATCTC-TGGCACACAGAA 1930 Query 3137 AATCCACGCAATGTTAGTGACACCACATATTCATATATACCTACT-GTA-CTA-AGCTAC 3193 || | || | | | |||| || || | || | | ||| | | || || Sbjct 1931 AACGTCAGAAACGCTTCAGCTTCCACTTACTC---TCAACTCATTGGTATCGATAGTTAT 1987 Query 3194 TCTACATGGCCACGCG---TCGCTAATGAATCAGATATACCCAATGGACTCTTCTGGGAC 3250 || |||||||| | | || |||| || | || | ||| | || ||||| Sbjct 1988 AGCACCTGGCCACGAGAAAGAGACAAAGAATTAG---TCCCAACTGGTGTTTTTTGGGAT 2044 Query 3251 CCACTAACTGATCCAGATAGCATCATGGAATTAAGACCCGGAAAAAACAGTATGTCATTT 3310 || ||| ||| | || ||||| | ||| | ||||| |||||||| |||||||| Sbjct 2045 CCCTTAAACGATGCTAATGGCATCTTAGAACTCAGACCTGGAAAAAATTCAATGTCATTC 2104 Query 3311 TCCTGGAATGCTCATGATTGTGATACTAATAAATGGTATAATTTAGATTGCATCGCAAAA 3370 || |||| || ||||||| |||||||||| |||| | ||| ||||| ||| Sbjct 2105 TCTTGGACACAACACCCTTGTGATGAAAATAAATGGTTTAATATCGATCAAATCGCTAAA 2164 Query 3371 TGGACTCCATATGTTCATGACAATCCAT-TCCAACACATAGGAAGAGCAGGTCAAGCAGG 3429 ||| ||| ||| || ||||||| | | |||| || | |||| | |||| Sbjct 2165 TGGTTTCCTTATACCGTCGATAATCCATATGAACCACA-CCAAACATATGGTCCACCAGG 2223 Query 3430 ATCATACAAAAT-TACCACCACCGACGACCCAGATCCATTATCAACATACTCATCATGGG 3488 |||||||| | || | | || || || || | | || || | || ||| Sbjct 2224 TACATACAAACTATATGGCGA-AGATGATCCTGACGAACTCACATCAGATAGTTCCTGG- 2281 Query 3489 CAACAACAGAACTCACCAAAGATGACTTTACCATACCAAACCTATTAAACATGCCAGTTG 3548 || ||| | | |||| ||||| |||||| || ||||| ||| | ||||| | | Sbjct 2282 --ACCACATATAGTAACAAAAATGACCCTACCATCCCTAACCTCTTAGAAATGCCTATAG 2339 Query 3549 TGCCCATGAACTGGTGGTGGCAAGAAATGCAGAAATCAATAG-CACAAACAACCA-CCCT 3606 | || ||| | |||| |||||||||||||| ||||| || | | | | ||| | Sbjct 2340 TACCTATGCAATGGTTCTGGCAAGAAATGCAAAAATCTATCGTTTCCATC--CCAGAAAT 2397 Query 3607 TAAAAAACCTGCATTATTCTGGGCAGGCACCGAATATGAACAATACAAATATCCACCCAC 3666 ||||||||| ||| ||||| || |||||||||||| || ||||| |||||| Sbjct 2398 CAAAAAACCTCTCTTACATTGGGCCGGAACCGAATATGAATGCTATAAATACGGACCCAC 2457 Query 3667 ACAATGCTTTCTTAAAGGTGTACCATTATTCGACGACAATGGCACACACGTAGAAACACT 3726 |||||| || | ||||| | || | || || ||||||| |||||| |||| || Sbjct 2458 ACAATGTTTCATCAAAGGCATTCCTCTCTTTGATGACAATGACACACATGTAGCCACCAC 2517 Query 3727 CACTCAAGGATGCTTCAGAGTCACACTACACCTAGCAGCCAAGAAACGAAGAAGCAGAAT 3786 || ||||| ||||| | ||| |||||||| || | ||| ||| || | ||| | || Sbjct 2518 AACACAAGGCTGCTTTCGCATCAGCCTACACCTCGCCGTCAAAAAAAGACGCAGCCGCAT 2577 Query 3787 ATTCGCTCCAACATGGGGACCACTAGCATGGACACAAATATACTCAATTGACGCACCAAG 3846 | ||| || |||||||| || || | |||| |||||| || | | ||| ||||| Sbjct 2578 CTACGCACCTACATGGGGTCCTCTTTCCTGGAGACAAATCTATGCTACAGACACACCATA 2637 Query 3847 AGCACCAAATGCAGTCAGATATAGAACAGGAGGAGCAAGAAGAACATGGACAAACATCGA 3906 |||| | |||| | || ||||||||||||||| ||||||||||||| || ||||| Sbjct 2638 CATACCATCTCTAGTCCGTTACAGAACAGGAGGAGCACGAAGAACATGGACCAATATCGA 2697 Score = 282 bits (312), Expect = 1e-72 Identities = 499/722 (69%), Gaps = 14/722 (2%) Strand=Plus/Minus Query 438 AAGATGCTGTCTGTTTACTACAACACAGATGGCAAATGGAATTTGAAACCaaaaaaaTTG 497 ||||||||||||| | ||| || | ||||| || ||||||||| | | | | || Sbjct 5622 AAGATGCTGTCTGCCTTCTAGCTAACCGTTGGCATATTGAATTTGAAGCTAGAGAGCATG 5563 Query 498 ATAATACCTGGTATGCCTGGGGACGCCAAAAACGCTTCACAGTAGGAGACCTAACAATTC 557 | | ||||| || ||||| |||| ||||||||||| | ||| ||| ||| Sbjct 5562 AGGGTGTGTGGTACGCGTGGGGCAAACAAAGTCGCTTCACAGTGGCAGAAACCACACTTC 5503 Query 558 AAAGAGCCCTGGGTGATCTGTTCACAGAGGAGCTGATAATCTTCCAGAGAGGTGCTCCGG 617 ||||||| || |||||||| | || ||| | || | ||| |||| || | || | Sbjct 5502 AAAGAGCTCTTGGTGATCTCTATTCACAGGGTTTCATCACCTTTCAGAAGGGACCACCTG 5443 Query 618 ACGATTCCTTTGACAGCGCCTTACGCTACCAACAATGCAAGCGCAAGTGGAACGTCCCCG 677 || ||||||||||||||| ||||||||||| ||||||||||||| |||||||| || | Sbjct 5442 ACACTTCCTTTGACAGCGCTCTACGCTACCAAAAATGCAAGCGCAAATGGAACGTGCCAG 5383 Query 678 AGCAAGTCTCTCTGAGCTCCGAAGATACTGGTGGAACGGCCACACCTGCTTGGTACAT-- 735 | |||||||| || |||||||| |||||| || | |||| | || | Sbjct 5382 ACGTAGTCTCTCAACCCTGCGAAGATATTGGTGGGGGGGGAATGCCTGTCATGAACTTTC 5323 Query 736 -GAAGAAGAAAAAACCTTAGATCTCCAATCACT---ACAAACCATCCTAAATACCTGGGA 791 ||||||| |||| ||||||| | | || |||| ||| |||| |||||| Sbjct 5322 GGAAGAAGGGAAAATCTTAGATACAGATACCCTAAAACAAGTCATGTTAAA---CTGGGA 5266 Query 792 CTCACGTGTATGGCAAGCATGTGTATTAGCTATATGGGATGATGCATTACCTGTACAAGA 851 || || |||||||||| |||||||| | ||| ||| ||| || |||| | | || Sbjct 5265 TTCTCGCATATGGCAAGCTTGTGTATTGGGTATTTGG---GATACAGCACCTATTCGTGA 5209 Query 852 TCCTAGACCATATGCTTTTTTAATGTCTTCTATTCCATCTGTAAAAATGTGGTTTTTATG 911 ||| |||| ||| || | | | | || || ||||| |||| ||||| | || Sbjct 5208 TCCACGACCTTATTGTTGTCTGTTAAATACTGTTAATTCTGTTAAAAAATGGTTAATCTG 5149 Query 912 TGCTGAAAATGATTCTAATGGAAATATGCATATACATTTATTAGCTCTAACACCACAAAG 971 ||| ||| ||||| ||||| | | | ||| ||||| | |||||||| || ||||| | Sbjct 5148 TGCAGAAGATGATAGTAATGAACAAACTCATGTACATGTTTTAGCTCTCACCTCACAACG 5089 Query 972 ATCTGATAGTTTCAAACGTACCTTAGAACGAATATGGAAGGATGTTGCAATTGTTGCTAT 1031 |||||| || ||||| ||||||||| || ||| | | || |||| || | Sbjct 5088 TTCTGATGCCTTTAAACGCACCTTAGAAAAAACTTGGCCACAAATCGCTCTTGTAGCATT 5029 Query 1032 GTCTGATATAGAAATGCCTGATCCTACCTTAGAAGTTGTTAAATGTCAAAAATGTCACAA 1091 ||||| ||| ||||||||| | | ||| ||||||||||||||||||| || || Sbjct 5028 ACAAGATATTGAAGAACCTGATCCTGTCCTTGAAATTGTTAAATGTCAAAAATGCCATAA 4969 Query 1092 ACCTAGTAGTTTAATCAGC-TATATGGTTAAAGATCCCATTTGGATAGCAGCTAGTGATT 1150 ||| |||||| | | ||| || ||| ||||||||| ||||| || || | ||||| Sbjct 4968 ACCCAGTAGTCT-TTTAGCATACATGACTAAAGATCCACACTGGATTGCTGCCAATGATT 4910 Query 1151 TA 1152 || Sbjct 4909 TA 4908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13595735795460