Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq5024 187 8e-44 seq7012 185 3e-43 >seq5024 Length=16258934 Score = 187 bits (206), Expect = 8e-44 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1494 GGCTGGGTGAAGAGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACC 1553 ||||||| ||| | ||||| || | ||| |||| ||||| | || ||||||| | Sbjct 1692762 GGCTGGGCTCAGAAAAAGTTCGGTAAGCGGAACACCATCTGGCTGTTTGGGCCTGCCAGC 1692703 Query 1554 ACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTT 1613 ||||| ||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct 1692702 ACCGGCAAGACCAACATCGCGGAAGCCATTGCCCATGCGGTGCCCTTCTACGGCTGTGTG 1692643 Query 1614 AACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGG 1673 |||||||| |||||||||||||| || || ||||| || || || ||| |||| |||||| Sbjct 1692642 AACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGG 1692583 Query 1674 GAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGG 1729 |||||||| || ||||| ||||| || || | || || || || |||| || Sbjct 1692582 GAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTTGGCCAAGGCCATCCTGGGCGG 1692527 Score = 86.0 bits (94), Expect = 2e-13 Identities = 203/304 (67%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 2588 TCGGGGCTTTGTACTTCCTGGCTATAAGTATCTTGGGCCTGGTAACGGCCTGGATAAAGG 2647 |||||| |||| |||||||| || ||||| || || || ||||| || || || || Sbjct 1691709 TCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGG 1691650 Query 2648 CCCACCTGTCAATAAGGCGGACAGCGTCGCGCTTGAACACGACAAGGCCTATGACCAGCA 2707 || ||||| |||| ||| || || || | |||||||||||||| ||||||| Sbjct 1691649 AGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGGCCTACAACCAGCA 1691590 Query 2708 GCTTAAAGCGGGAGACAACCCATATATAAAATTCAATCACGCTGACCAGGACTTTATAGA 2767 ||| | | || |||||||| || | || | ||| ||||| ||| || || | Sbjct 1691589 GCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGACGCCGAGTTCCAGCA 1691530 Query 2768 TAGCCTCCAAGACGACCAGTCATTCGGAGGTAATCTTGGAAAGGCTGTATTTCAGGCCAA 2827 || | | | || ||| || || || || || || || ||||| |||||||| Sbjct 1691529 GCGCTTGGAGCAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCGGTATTCCAGGCCAA 1691470 Query 2828 -AAAACGTATCTTAGAGCCATTTGGCCTAGTAGAAGATCCTGTCAACACGGCACCTGCAA 2886 |||| | ||| | | | ||||| || || || || | | || ||||| |||| || Sbjct 1691469 GAAAAGGGTTCTCA-AATCTTTTGGTCTGGTTGAGGAAGCGGCTAAGACGGCTCCTGGAA 1691411 Query 2887 AAAA 2890 |||| Sbjct 1691410 AAAA 1691407 >seq7012 Length=11079692 Score = 185 bits (204), Expect = 3e-43 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1528 CCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTATTGCCC 1587 |||| ||||| | || ||||| ||||| || |||||||||||||| ||||| ||||||| Sbjct 2895050 CCATCTGGCTGTTTGGGCCTGCTACCACGGGCAAGACCAACATTGCGGAAGCCATTGCCC 2895109 Query 1588 ATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATT 1647 |||| || ||||| || ||||| || ||||||||||||||||||||||| || || |||| Sbjct 2895110 ATGCAGTGCCCTTTTACGGCTGCGTGAACTGGACTAATGAGAACTTTCCGTTCAACGATT 2895169 Query 1648 GTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAAT 1707 | | || |||||| |||| |||||||||||||| || |||||| ||||| || || | Sbjct 2895170 GCCTCGACAAAATGGTGATCTGGTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTAGAGT 2895229 Query 1708 CTGCAAAAGCAATTTTGGGAGG 1729 | || || || || |||| || Sbjct 2895230 CAGCCAACGCCATCCTGGGCGG 2895251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16225170813995