Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq5024 369 1e-98 seq7012 363 5e-97 >seq5024 Length=16258934 Score = 369 bits (408), Expect = 1e-98 Identities = 452/615 (73%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 1063 CTGACCAAGACGGCGGAGGACTACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATC 1122 |||||||| ||||| ||||||||| || || || | || || || ||||| Sbjct 1692888 CTGACCAAAACGGCTCCGGACTACCTGGTTGGGCAGCAGCCTGTG------GAGGACATT 1692835 Query 1123 CGTCAGAACCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGG 1182 || | |||| ||| ||| |||| | || ||||| |||||||| ||| | || Sbjct 1692834 CGGGACAACCACATTTACCAGATCTTACAAATGAACGGGTACGACCCCCAGTAGGCGGCC 1692775 Query 1183 AGTATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTC 1242 | || | || ||| ||||| || | || ||||| ||||| | |||||||| Sbjct 1692774 TCCGTGTTCCTGGGCTGGGCTCAGAAAAAGTTCGGTAAGCGGAACACCATCTGGCTGTTT 1692715 Query 1243 GGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 || | ||| | |||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct 1692714 GGGCCTGCCAGCACCGGCAAGACCAACATCGCGGAAGCCATTGCCCATGCGGTGCCCTTC 1692655 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATG 1362 || || || || ||||||||||| |||||||||||||||||||| |||||||| || ||| Sbjct 1692654 TACGGCTGTGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATG 1692595 Query 1363 ATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATT 1422 | |||||||||||||||||||| ||||||||||| || ||||| |||||||| || Sbjct 1692594 GTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTTGGCCAAGGCCATC 1692535 Query 1423 CTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 ||||| || ||| | ||||||||||| ||||| | |||| | |||||| || Sbjct 1692534 CTGGGCGGCAGCAAGGTACGTGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCC 1692475 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACC 1542 || || |||| | || |||||||||||||| || || |||||||||| ||| Sbjct 1692474 ACCCCCATCATCGTGACGTCCAACACCAACATGTGCACGGTGATTGACGGGAACAGCACC 1692415 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAA-TTGCTGACTCG 1601 ||||| || || ||||||||||| | ||| ||||||| ||| | ||| || | || || Sbjct 1692414 ACGTTTGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAGTTTGAACTTACCCAC-CG 1692356 Query 1602 GTTGCCTGATGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGGTC 1661 || | ||||||||| ||||| ||||||||||| || | || ||| ||||| | Sbjct 1692355 TCTGGATCATGACTTTGACAAGGTCACCAAACAGGAAGTCAAAGACTTTTTCCGGTGGGC 1692296 Query 1662 TCAGGATCACCTGAC 1676 || |||||| |||| Sbjct 1692295 CCAAGATCACGTGAC 1692281 Score = 176 bits (194), Expect = 1e-40 Identities = 224/305 (73%), Gaps = 5/305 (2%) Strand=Plus/Minus Query 2392 AGGACGATTCGAGAGGTCTCGTGTTCCCAGGCTACAATTATCTAGGCCCTTTCAACGGTC 2451 ||||| | || | ||||| ||| | || || ||||| || || || || |||||||| | Sbjct 1691719 AGGACAACTCTCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGAC 1691660 Query 2452 TAGATAAAGGAGAACCCGTCAACGAGGCAGACGCTGCCGCCTTAGAACACGACAAGGCTT 2511 | || || ||||| || ||||||||||||||||| || ||| | | ||||||||||| | Sbjct 1691659 TCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGGCCT 1691600 Query 2512 ACGACCTCGAAATCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGACAGAC 2571 || ||| | || || ||| ||||||||||| | |||||||| | |||||| | | Sbjct 1691599 ACAACCAGCAGCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGAC-GCC 1691541 Query 2572 GT-TTCCAGGAACGTCTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGCCATC 2630 | |||||| | || | | | ||||| || ||||| ||||| | || ||| | Sbjct 1691540 GAGTTCCAGCAGCGCTTGGAGCAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCGGTA 1691481 Query 2631 TTCCAGGCCAAAAAGAGGGTTCTCGAACCCTTTGGTCTGGT---GGAAGACTCAAAGACG 2687 ||||||||||| || ||||||||| || | ||||||||||| ||||| | |||||| Sbjct 1691480 TTCCAGGCCAAGAAAAGGGTTCTCAAATCTTTTGGTCTGGTTGAGGAAGCGGCTAAGACG 1691421 Query 2688 GCTCC 2692 ||||| Sbjct 1691420 GCTCC 1691416 >seq7012 Length=11079692 Score = 363 bits (402), Expect = 5e-97 Identities = 650/940 (69%), Gaps = 27/940 (3%) Strand=Plus/Plus Query 663 CGGGGGCGCGAACAAGGTCCGGGCCGAGTCGTATATTCCCGCCTACCTGATCCCGAAACA 722 ||| |||| ||||||||| || ||||| ||||||||| ||||||| |||| ||| Sbjct 2894487 CGGTGGCGGGAACAAGGTGGTGGACGAGTGCTATATTCCCAACTACCTGCTCCCCAAAAC 2894546 Query 723 GCAACCGGAAGTGCAGTGGGCGTGGACTAACGTGCCCGAGTATATAAAAGCGTGCTTGCA 782 ||||||||| | |||||||||||||||||| || |||||||||| ||||| ||| | Sbjct 2894547 CCAACCGGAACTTCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGTTTGAA 2894606 Query 783 CCGAGAACTGCGTGCCA--GTCTCGCGCGACTTCACTTCGAGGAGG-CGGGC-GTCTC-- 836 || | | | | || | | ||| | | ||| | | | | | | | | | | Sbjct 2894607 CCTCG--CGGAGCGCAAACGGCTCATGGCTCAACACCTGACGCACGTCAGTCAGACACAG 2894664 Query 837 --GCAATCCAAGGAAAATCTCGCGAGAACTGCAGACGGCGCTCCCGTGATGCCGACCCGC 894 ||| ||| |||||| | || | | |||| | || ||||| | | | Sbjct 2894665 GAGCAGAACAAAGAAAATTTGAACCCAAATTCTGACG---CGCCTGTGATCCGGTCAAAA 2894721 Query 895 GTCAGCAAACGCTACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAG 954 | || || ||||||||||| || | ||||||||||| ||||||||||| | || Sbjct 2894722 ACCTCCACGCGATACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATCACGTCAGAA 2894781 Query 955 AAGGAATGGCTGCTGGAAAACAGAGAAAGCTTTCGG-AGCT--TTCAG-GCCTCGAGCAA 1010 ||| ||||| | | ||| || | |||| | | || |||| ||| | || Sbjct 2894782 AAGCAATGGATCCAGGAGGACC----AGGCTTCCTACATCTCCTTCAACGCCGTGTCAAA 2894837 Query 1011 CTCGGCGCGTCAGATCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACCAA 1070 || | |||||| ||| | || || | ||| | | ||| ||||| || Sbjct 2894838 TTCCCGGTCTCAGATTAAGGCCGCTTTGGACAATGCCTCTAAAATTATGAGCCTGACAAA 2894897 Query 1071 GACGGCGGAGGACTACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAA 1130 | | | ||||||||| | ||| || | ||||| || ||||| ||||| Sbjct 2894898 AATGCCTCCGGACTACCTGATTGGACAGCAGCCCGTG------GAGGACATTAAGCAGAA 2894951 Query 1131 CCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATTTT 1190 |||||| ||| |||| | || ||||| ||||||||| | |||| || | || Sbjct 2894952 CCGCATTTACCGGATTTTACAAATGAACGGCTACGACCCCGAGTACACGGCCTCCGTCTT 2895011 Query 1191 GGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGC 1250 | || ||| |||||||||| || ||||| || || | |||||||| || | ||| Sbjct 2895012 TCTGGGCTGGGCTCAGAAGAAATTCGGGAAGCGGAATACCATCTGGCTGTTTGGGCCTGC 2895071 Query 1251 GACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGATG 1310 ||||| |||||||||||||| ||||| || ||||||||||| ||||| || || || || Sbjct 2895072 TACCACGGGCAAGACCAACATTGCGGAAGCCATTGCCCATGCAGTGCCCTTTTACGGCTG 2895131 Query 1311 CGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTG 1370 ||| |||||||| || |||||||||||||||||||| ||| |||| |||||| | ||||| Sbjct 2895132 CGTGAACTGGACTAATGAGAACTTTCCGTTCAACGATTGCCTCGACAAAATGGTGATCTG 2895191 Query 1371 GTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGG 1430 ||||||||||||||| ||||| ||||| || || || ||||||| || || ||||| || Sbjct 2895192 GTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTAGAGTCAGCCAACGCCATCCTGGGCGG 2895251 Query 1431 ATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGT 1490 ||| | || |||||||| ||||| | |||| | |||||| || ||||| || Sbjct 2895252 CAGCAAGGTACGTGTCGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCCACGCCCGT 2895311 Query 1491 CATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGA 1550 ||| | || |||||||||||||| || || |||||||||| ||||| || || Sbjct 2895312 CATCGTGACGTCCAACACCAACATGTGCGCGGTGATTGACGGGAACAGCACCACCTTTGA 2895371 Query 1551 GCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAA 1590 ||| |||||||||| ||||| ||||||| ||| | ||| Sbjct 2895372 GCACCAGCAGCCGTTACAGGACCGGATGTTCAAGTTTGAA 2895411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14906935677855