Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq5024 437 3e-119 seq7012 432 1e-117 >seq5024 Length=16258934 Score = 437 bits (484), Expect = 3e-119 Identities = 926/1374 (67%), Gaps = 28/1374 (2%) Strand=Plus/Minus Query 411 TGGAAGAGCACCTGCCTGGAATTTCTGACAACTTTGTAGACTGGGTAACTGGTCAAATTT 470 |||| ||||||| || || ||||||||| |||||| ||||||| | | | | Sbjct 1693670 TGGACCAGCACCTCCCGGGTGTTTCTGACAGCTTTGTGAACTGGGTGGCCGAGAAGGAGT 1693611 Query 471 GGGAGCTGCCTCCCGAGTCAGATTTGAATTTGACTCTGATTGAGCAGCCTCAGCTGACGG 530 ||||||||| || || || || || || ||| ||| || || ||| | | || || | Sbjct 1693610 GGGAGCTGCTGCCAGATTCTGACATGGATCTGAATCTCATAGAACAGGCGCCCCTCACCG 1693551 Query 531 TGGCTGACAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAG---CAGG 587 | || || | | | |||| || ||| ||| |||| | |||| | || Sbjct 1693550 TAGCCGAGAAGCTGCAGCGCGACTTTCTGACCGAATGGAGGCGGGTGAGCAAGGCCCCGG 1693491 Query 588 AGAGCAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTCG 647 || | || |||||||| ||||||||||| ||||| || |||||| || | Sbjct 1693490 AGGCCCTCTTTTTTGTGCAATTTGAAAAGGGGGAGAGCTATTTCCACCTGCACGTCCTGG 1693431 Query 648 TGGAGACCTCCGGCATCTCTTCTATGGTCCTTGGCCGCTACGTGAGTCAGATTCGCGCCC 707 |||||||| |||| || ||| | || ||||| | ||||||||||||||||| Sbjct 1693430 TGGAGACCACCGGGGTCAAGAGCATGATGCTGGGCCGGTTCGTGAGTCAGATTCGCGAGA 1693371 Query 708 AGCTGGTGAAGGTGGTGTTCCAGAAC-ATTGAGCCGCGGATTAACGACTGGGTCGCCATC 766 ||||||| | | || || | | || ||||| || ||||| | || | Sbjct 1693370 AGCTGGTCA-GCTGCATTTACCGCGGGATCAAGCCGACCATGCCGAACTGGTTTGCGGTG 1693312 Query 767 ACCAAG----GTAAAGAAG--GGCGGAGCCAATAAGGTGGTGGATTCTGGGTATATTCCC 820 |||||| |||| | | ||||| || |||||||| || | || || ||| Sbjct 1693311 ACCAAGACGCGTAATGGCGCCGGCGGGAGGAACAAGGTGGTAGACGACTGCTACATCCCC 1693252 Query 821 GCCTACCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAACCTCGAAGAG 880 ||||||||| || || ||| || ||||| |||||||||||||||||| | || || Sbjct 1693251 AACTACCTGCTCCCCAAAACCCAGCCCGAGCTCCAGTGGGCGTGGACTAACATGGAGCAG 1693192 Query 881 TATAAATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAG--TTTCAG- 937 |||| | | | ||||| | |||||| ||||||||||| |||||| ||| | Sbjct 1693191 TATATAAGCGTGTGTTTAAATCTTGCGGAGCGTAAACGGCTCGTGGCTCAGCATTTGACA 1693132 Query 938 --CTTGAGTCCT-CGCAGCGCTCGCAAGAGGCATCTTCCCAGAGGGACGTTTCGGCTGAC 994 | | || | ||||| | | || | | || ||| | ||| | | Sbjct 1693131 CACATCAGCCAGACGCAG-GAGCAGAACAAAGAGAATC--AGAATCCCAATTCTGACGCG 1693075 Query 995 CCGGTCATCAAGAGCAAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAA 1054 || || ||| | || || ||| ||||||| ||| | | ||||| |||| Sbjct 1693074 CCTGTGATCTGGTCAAAAACCTCCGCTTGCTACATGGAGCTAATCGGGTGGCTCATGGAC 1693015 Query 1055 CATGGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTC 1114 | |||||||| || || ||||| ||||| |||||| | |||| |||| | |||||| Sbjct 1693014 AAAGGCATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCCTCCTACATTTCCTTC 1692955 Query 1115 AACTCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGCGTCAAAAATT 1174 ||| | || ||| || ||| || |||||||| || || ||||| || ||||| Sbjct 1692954 AACGCGCCGTCAAATTCGCGGTCACAAATTAAAGCGGCCCTGGACAATGCCAGCAAAATC 1692895 Query 1175 ATGAGTCTGACCAAATCTGCCTCAGACTATCTCGTGGGACAGA---CTGTTCCAGAGGAC 1231 ||||| ||||||||| | || | ||||| || || || ||| |||| |||||| Sbjct 1692894 ATGAGCCTGACCAAAACGGCTCCGGACTACCTGGTTGGGCAGCAGCCTGTG---GAGGAC 1692838 Query 1232 ATTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCG 1291 ||| || ||| || | ||||| || | | ||||| |||||||| || ||| Sbjct 1692837 ATTCGGGACAACCACATTTACCAGATCTTACAAATGAACGGGTACGACCCCCAGTAGGCG 1692778 Query 1292 GGCTCTGTTCTCTACGGCTGGTGCACTCGCGCCTTT-GGAAAGAGGAACACCGTCTGGCT 1350 | ||| || || |||||| || | || || ||| |||||||| ||||||| Sbjct 1692777 GCCTCCGTGTTCCTGGGCTGG-GCTCAGAAAAAGTTCGGTAAGCGGAACACCATCTGGCT 1692719 Query 1351 GTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCC 1410 || ||| || || | |||||| ||||||||||||||||||||||| | || | ||||| Sbjct 1692718 GTTTGGGCCTGCCAGCACCGGCAAGACCAACATCGCGGAAGCCATTGCCCATGCGGTGCC 1692659 Query 1411 CTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAA 1470 ||| || ||||||||||||||||| ||||||||||| || || Sbjct 1692658 CTTCTACGGCTGTGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAA 1692599 Query 1471 AATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGC 1530 ||| ||||||||||||||||||| ||||||||| |||||| ||||| |||||||| Sbjct 1692598 GATGGTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTTGGCCAAGGC 1692539 Query 1531 CATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGA 1590 |||| |||| || | ||||| ||||| ||||| || || || || | || | || Sbjct 1692538 CATCCTGGGCGGCAGCAAGGTACGTGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGA 1692479 Query 1591 CTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTC 1650 | | ||||| | || | || ||||| || |||||||| |||| | || |||||| Sbjct 1692478 CCCCACCCCCATCATCGTGACGTCCAACACCAACATGTGCACGGTGATTGACGGGAACAG 1692419 Query 1651 CACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTCATGCG 1710 ||| || |||||||||||||||||| || ||||||| ||||||| |||||||| | | Sbjct 1692418 CACCACGTTTGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAGTTTGAACTTACCCA 1692359 Query 1711 GCGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAGTCAAAGACTTTTT 1764 || || | || |||| |||| | ||||| |||||||||||||||||||| Sbjct 1692358 CCGTCTGGATCATGACTTTGACAAGGTCACCAAACAGGAAGTCAAAGACTTTTT 1692305 Score = 219 bits (242), Expect = 1e-53 Identities = 308/432 (71%), Gaps = 3/432 (1%) Strand=Plus/Minus Query 2298 CCCCGAAACCCAAGGCCAATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCCTG 2357 |||| | |||| || |||||||| | || || ||| |||| |||||||||||||||| Sbjct 1691749 CCCCCCAGCCCAGAGCGAATCAACAACACCAGGACAACTCTCGGGGTCTTGTGCTTCCTG 1691690 Query 2358 GGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGCTG 2417 |||||||||| || || || ||||| || || ||||| || || ||||| || | Sbjct 1691689 GGTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGAGAGCCGGTCAACGAGGCAG 1691630 Query 2418 ACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAACC 2477 ||| | |||| | ||||||| ||||| | | ||||| || | || || |||| Sbjct 1691629 ACGCCGCGGCCCTCGTGCACGACAAGGCCTACAACCAGCAGCTCCAGTCAGGGGACAACC 1691570 Query 2478 CTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACACTT 2537 | |||||||||||||||||||| ||||| ||||| ||| || | | || || | Sbjct 1691569 CGTACCTCAAGTACAACCACGCCGACGCCGAGTTCCAGCAGCGCTTGGAGCAAGATACGT 1691510 Query 2538 CTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACCTC 2597 |||||||||| ||||| ||| || || |||||||| || || ||| ||||| || || Sbjct 1691509 CTTTTGGGGGCAACCTCGGGCGAGCGGTATTCCAGGCCAAGAAAAGGGTTCTCAAATCTT 1691450 Query 2598 TTGGCCTGGTTGAGACGCCGGATAAAACGGCGCCTGCGGCAAAAAAGAGGCCTCTAGAGC 2657 |||| ||||||||| ||| ||| ||||| ||| | ||||||||| || |||||| Sbjct 1691449 TTGGTCTGGTTGAGGAAGCGGCTAAGACGGCTCCT---GGAAAAAAGAGACCACTAGAGG 1691393 Query 2658 AGAGTCCTCAAGAGCCAGACTCCTCGAGCGGAGTTGGCAAGAAAGGCAAACAGCCTGCCA 2717 | ||| ||||| | ||||| || || | ||||| |||| | || || || | Sbjct 1691392 ACTCTCCCCAAGAACTGGACTCTTCTGTGGGCATCGGCAAATCAGGCCAGCAACCCGCTA 1691333 Query 2718 GAAAGAGACTCA 2729 ||| ||| ||| Sbjct 1691332 AAAAAAGATTCA 1691321 >seq7012 Length=11079692 Score = 432 bits (478), Expect = 1e-117 Identities = 894/1321 (68%), Gaps = 38/1321 (3%) Strand=Plus/Plus Query 411 TGGAAGAGCACCTGCCTGGAATTTCTGACAACTTTGTAGACTGGGTAACTGGTCAAATTT 470 |||| |||| | || || |||||||||| |||||| ||||||| ||| | | Sbjct 2894108 TGGACAAGCATTTACCGGGTATTTCTGACAGCTTTGTGAACTGGGTGGCTGAGAAGGAAT 2894167 Query 471 GGGAGCTGCCTCCCGAGTCAGATTTGAATTTGACTCTGATTGAGCAGCCTCAGCTGACGG 530 ||||| |||| || || || || || || || ||||||||||||| | | ||||| | Sbjct 2894168 GGGAGTTGCCCCCGGATTCTGACATGGATCAGAATCTGATTGAGCAGGCACCCCTGACCG 2894227 Query 531 TGGCTGACAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAG---CAGG 587 |||| || | | | |||| || ||| || ||| | | | ||| | || Sbjct 2894228 TGGCCGAAAAGCTACAGCGCGACTTTCTGACGGAATGGCGCCATGTGAGTAAGGCCCCGG 2894287 Query 588 AGAGCAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACGCTCG 647 || | || ||||| || |||||| |||| |||||||| || || ||| | Sbjct 2894288 AGGCCCTCTTTTTTGTTCAATTTGAAGAGGGGGAGAGCTATTTTCACCTCCATGTGCTTG 2894347 Query 648 TGGAGACCTCCGGCATCTCTTCTATGGTCCTTGGCCGCTACGTGAGTCAGATTCGCGCCC 707 ||||||| |||| | | ||| || ||||| | |||||||||||||||| Sbjct 2894348 TGGAGACTACCGGGGTGAAGAGCACGGTGCTAGGCCGTTTTGTGAGTCAGATTCGCGATA 2894407 Query 708 AGCTGGTGAAGGTGGTGTTCCAGAACATTGAGCCGCGGATTAACGACTGGGTCGCCATCA 767 ||||||| || | | || || |||||| || ||||| |||| ||| Sbjct 2894408 AGCTGGTTCAGCGCATTTGCCGCGGGATCGAGCCGACCATGCCGAACTGGTTCGCGGTCA 2894467 Query 768 CCAAG----GTAAAGAAG--GGCGGAGCCAATAAGGTGGTGGATTCTGGGTATATTCCCG 821 | || |||| | | || || | || ||||||||||| | ||||||||| Sbjct 2894468 CAAAAACGCGTAATGGCGCCGGTGGCGGGAACAAGGTGGTGGACGAGTGCTATATTCCCA 2894527 Query 822 CCTACCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAACCTCGAAGAGT 881 ||||||||| || || |||||| || ||||||||||||||||||||| | || |||| Sbjct 2894528 ACTACCTGCTCCCCAAAACCCAACCGGAACTTCAGTGGGCGTGGACTAACATGGAGGAGT 2894587 Query 882 ATAAATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAGTTTCAG---- 937 ||| | || | || || | |||||||||||||||| | ||||| | | Sbjct 2894588 ATATAAGCGCGTGTTTGAACCTCGCGGAGCGCAAACGGCTCATGGCTCAACACCTGACGC 2894647 Query 938 -CTTGAGTCCT-CGCAGCGCTCGCAAGAGGCATCTT----CCCAGAGG--GACGTTTCGG 989 | | |||| | ||| | | | | | || |||| | |||| | | Sbjct 2894648 ACGTCAGTCAGACACAGGAGCAGAACAAAGAAAATTTGAACCCAAATTCTGACGCGCCTG 2894707 Query 990 CTGACCCGGTCATCAAGAGCAAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGG 1049 ||| ||||||| || || ||| | |||||||| |||||| | ||||| | Sbjct 2894708 -TGATCCGGTCA--------AAAACCTCCACGCGATACATGGAGCTGGTCGGGTGGCTCG 2894758 Query 1050 TGGAACATGGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGT 1109 |||| | || ||||| || || ||||| ||||| |||||| | |||| |||| | | Sbjct 2894759 TGGACAAGGGGATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCTTCCTACATCT 2894818 Query 1110 CCTTCAACTCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGCGTCAA 1169 |||||||| || | ||| || ||| |||||||| ||||| | ||||| || || | Sbjct 2894819 CCTTCAACGCCGTGTCAAATTCCCGGTCTCAGATTAAGGCCGCTTTGGACAATGCCTCTA 2894878 Query 1170 AAATTATGAGTCTGACCAAATCTGCCTCAG-ACTATCTCGTGGGACAGACTGTTCCAG-A 1227 |||||||||| ||||| ||| |||||| | |||| || | |||||| | | | | | Sbjct 2894879 AAATTATGAGCCTGACAAAAA-TGCCTCCGGACTACCTGATTGGACAG-CAGCCCGTGGA 2894936 Query 1228 GGACATTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATA 1287 ||||||| | ||| | || | | |||||| | | |||||||||||||| | || Sbjct 2894937 GGACATTAAGCAGAACCGCATTTACCGGATTTTACAAATGAACGGCTACGACCCCGAGTA 2894996 Query 1288 CGCGGGCTCTGT-TCTCTACGGCTGGTGCACTCGCGCCTTT-GGAAAGAGGAACACCGTC 1345 | ||| ||| || | ||| |||||| || | | || || ||| |||| ||| || Sbjct 2894997 CACGGCCTCCGTCTTTCTG-GGCTGG-GCTCAGAAGAAATTCGGGAAGCGGAATACCATC 2895054 Query 1346 TGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACC 1405 ||||||| ||| || || ||||| || ||||||||||| ||||||||||| | || | Sbjct 2895055 TGGCTGTTTGGGCCTGCTACCACGGGCAAGACCAACATTGCGGAAGCCATTGCCCATGCA 2895114 Query 1406 GTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNN 1465 ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 2895115 GTGCCCTTTTACGGCTGCGTGAACTGGACTAATGAGAACTTTCCGTTCAACGATTGCCTC 2895174 Query 1466 GAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCC 1525 || |||||| ||||||||||||||||||| |||||||| |||||| || || | ||| Sbjct 2895175 GACAAAATGGTGATCTGGTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTAGAGTCAGCC 2895234 Query 1526 AAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAA 1585 || |||||| |||| || | ||||| || || ||||| || || || || | || Sbjct 2895235 AACGCCATCCTGGGCGGCAGCAAGGTACGTGTCGACCAAAAGTGCAAGTCATCGGCCCAG 2895294 Query 1586 GTAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGG 1645 | ||| | || || || || | || ||||| || |||||||| | |||| | || ||| Sbjct 2895295 ATCGACCCCACGCCCGTCATCGTGACGTCCAACACCAACATGTGCGCGGTGATTGACGGG 2895354 Query 1646 AACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTTCAGATTTGAACTC 1705 ||| ||| |||||||| |||||||||||| | | ||||| ||||||| |||||| || Sbjct 2895355 AACAGCACCACCTTTGAGCACCAGCAGCCGTTACAGGACCGGATGTTCAAGTTTGAAATC 2895414 Query 1706 A 1706 | Sbjct 2895415 A 2895415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903736078010