Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq5024 179 1e-41 seq7012 174 5e-40 >seq5024 Length=16258934 Score = 179 bits (198), Expect = 1e-41 Identities = 182/235 (77%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 1539 CCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCC 1598 |||| ||||| | || ||||| | |||||| ||||||||||| || || || ||||||| Sbjct 1692728 CCATCTGGCTGTTTGGGCCTGCCAGCACCGGCAAGACCAACATCGCGGAAGCCATTGCCC 1692669 Query 1599 ATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACT 1658 |||| || |||||||| |||||||| |||||||| ||||||||||| || || || || | Sbjct 1692668 ATGCGGTGCCCTTCTACGGCTGTGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATT 1692609 Query 1659 GCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAAT 1718 |||| || || ||| | || |||||||||||||| || |||||| || || ||||| | Sbjct 1692608 GCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGT 1692549 Query 1719 CCGCAAAAGCGATACTgggggggTCTGC--TGTACGAGTTGATCAAAAGTGTAAG 1771 || || || || ||||| || | || ||||| || || |||||||| ||| Sbjct 1692548 TGGCCAAGGCCATCCTGGGCGG--CAGCAAGGTACGTGTGGACCAAAAGTGCAAG 1692496 >seq7012 Length=11079692 Score = 174 bits (192), Expect = 5e-40 Identities = 183/239 (77%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 1535 AATGCCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATT 1594 ||| |||| ||||| | || ||||| ||||| || ||||||||||| || || || ||| Sbjct 2895046 AATACCATCTGGCTGTTTGGGCCTGCTACCACGGGCAAGACCAACATTGCGGAAGCCATT 2895105 Query 1595 GCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAAT 1654 |||||||| || ||||| || ||||| || |||||||||||||||||||| || || || Sbjct 2895106 GCCCATGCAGTGCCCTTTTACGGCTGCGTGAACTGGACTAATGAGAACTTTCCGTTCAAC 2895165 Query 1655 GACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTG 1714 || ||| | || |||||| | || |||||||||||||| || ||||| || || || Sbjct 2895166 GATTGCCTCGACAAAATGGTGATCTGGTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTA 2895225 Query 1715 GAATCCGCAAAAGCGATACTgggggggTCTGC--TGTACGAGTTGATCAAAAGTGTAAG 1771 || || || || || || ||||| || | || ||||| || || |||||||| ||| Sbjct 2895226 GAGTCAGCCAACGCCATCCTGGGCGG--CAGCAAGGTACGTGTCGACCAAAAGTGCAAG 2895282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16308360409965