Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq7012 489 5e-135 seq5024 486 6e-134 >seq7012 Length=11079692 Score = 489 bits (542), Expect = 5e-135 Identities = 909/1326 (69%), Gaps = 46/1326 (3%) Strand=Plus/Plus Query 397 TGACGTGGAGGAACATCTGCCTGGAATTTCTGACAGCTTTGTGGACTGGGTAACTGGTCA 456 |||| |||| | ||| | || || |||||||||||||||||| ||||||| ||| | Sbjct 2894103 TGACCTGGACAAGCATTTACCGGGTATTTCTGACAGCTTTGTGAACTGGGTGGCTGAGAA 2894162 Query 457 AATTTGGGAGCTGCCTCCAGAGTCAGATTTAAATTTGACTCTGGTTGAACAGCCTCAGTT 516 |||||| |||| || || || || | || || |||| |||| ||| | | | Sbjct 2894163 GGAATGGGAGTTGCCCCCGGATTCTGACATGGATCAGAATCTGATTGAGCAGGCACCCCT 2894222 Query 517 GACGGTGGCTGATAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAG-- 574 ||| ||||| || | | | |||| || ||| || ||| | | | ||| Sbjct 2894223 GACCGTGGCCGAAAAGCTACAGCGCGACTTTCTGACGGAATGGCGCCATGTGAGTAAGGC 2894282 Query 575 -CAGGAGTCCAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACAC 633 | |||| || || ||||| || |||||| |||| |||||||| || || Sbjct 2894283 CCCGGAGGCCCTCTTTTTTGTTCAATTTGAAGAGGGGGAGAGCTATTTTCACCTCCATGT 2894342 Query 634 GCTTGTGGAGACCTCCGGCATCTCTTCCATGGTCCTCGGCCGCTACGTGAGTCAGATTCG 693 |||||||||||| |||| | || ||| || ||||| | |||||||||||||| Sbjct 2894343 GCTTGTGGAGACTACCGGGGTGAAGAGCACGGTGCTAGGCCGTTTTGTGAGTCAGATTCG 2894402 Query 694 CGCCCAGCTGGTGAAAGTGGTCTTCCAGGGAATTGAACC--CCAGATCAACGACTGGGTC 751 || ||||||| | | | || || || || || ||| | | ||||| || Sbjct 2894403 CGATAAGCTGGTTCAGCGCATTTGCCGCGGGATCGAGCCGACCATGCCGA--ACTGGTTC 2894460 Query 752 GCCATCACCAAG----GTAAAGAAG--GGCGGAGCCAATAAGGTGGTGGATTCTGGGTAT 805 || |||| || |||| | | || || | || ||||||||||| | ||| Sbjct 2894461 GCGGTCACAAAAACGCGTAATGGCGCCGGTGGCGGGAACAAGGTGGTGGACGAGTGCTAT 2894520 Query 806 ATTCCCGCCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTG 865 |||||| ||||||||| || || ||||||||| ||||||||||||||||| ||| || Sbjct 2894521 ATTCCCAACTACCTGCTCCCCAAAACCCAACCGGAACTTCAGTGGGCGTGGACTAACATG 2894580 Query 866 GACGAGTATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAGTTT 925 || ||||||| | || |||| || | |||||||||||||||| | || || Sbjct 2894581 GAGGAGTATATAAGCGCGTGTTTGAACCTCGCGGAGCGCAAACGGCTCATGGCTCAACAC 2894640 Query 926 CTGGCAGAATCCTCGCAGCGCTCGCAGGAGGCGGC---------TTCGCAGCGTGAGTTC 976 ||| | | | ||| | |||||| | || | | | | ||| Sbjct 2894641 CTGACGCACGTCAGTCAGA---CACAGGAGCAGAACAAAGAAAATTTGAACCCAAA-TTC 2894696 Query 977 T----CGGCTG--ACCCGGTCATCAAAAGCAAGACTTCCCAGAAATACATGGCGCTCGTC 1030 | || ||| | ||||||| || || ||| | |||||||| ||| ||| Sbjct 2894697 TGACGCGCCTGTGATCCGGTCA--------AAAACCTCCACGCGATACATGGAGCTGGTC 2894748 Query 1031 AACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAAATCAGGAG 1090 ||||||||||| | || ||||| || || ||||| ||||||||||| | |||| Sbjct 2894749 GGGTGGCTCGTGGACAAGGGGATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCT 2894808 Query 1091 AGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATCAAGGCCGCGCTCGAC 1150 |||| ||||||||||| || || || ||| ||||| |||||||| | ||| Sbjct 2894809 TCCTACATCTCCTTCAACGCCGTGTCAAATTCCCGGTCTCAGATTAAGGCCGCTTTGGAC 2894868 Query 1151 AACGCGACCAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTACCTCGTGGGG-AGCT- 1208 || || | ||||||||||| |||||||||| | ||||||||| | || ||| Sbjct 2894869 AATGCCTCTAAAATTATGAGCCTGACAAAAATGCCTCCGGACTACCTGATTGGACAGCAG 2894928 Query 1209 -CCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTAC 1267 |||| ||||||||| | ||| | || | | ||||| | ||||| |||||| Sbjct 2894929 CCCGTG---GAGGACATTAAGCAGAACCGCATTTACCGGATTTTACAAATGAACGGCTAC 2894985 Query 1268 GACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGG 1327 ||||| | ||| ||| ||| || | |||||| |||| ||| ||| || Sbjct 2894986 GACCCCGAGTACACGGCCTCCGTCTTTCTGGGCTGGGCTCAGAAGAAATTCGGGAAGCGG 2895045 Query 1328 AACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATC 1387 || ||| ||||||| | || || || || || |||||||||||||| ||||| ||||| Sbjct 2895046 AATACCATCTGGCTGTTTGGGCCTGCTACCACGGGCAAGACCAACATTGCGGAAGCCATT 2895105 Query 1388 GCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAAT 1447 ||||| | ||||||||||||||||||||||||||||| ||||| |||||||| || || Sbjct 2895106 GCCCATGCAGTGCCCTTTTACGGCTGCGTGAACTGGACTAATGAGAACTTTCCGTTCAAC 2895165 Query 1448 GACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTT 1507 || || | ||||||||| | || |||||||||||||| |||||||| |||||| || Sbjct 2895166 GATTGCCTCGACAAAATGGTGATCTGGTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTA 2895225 Query 1508 GAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCC 1567 || || ||||| ||||||||||| ||| ||||| || ||||| || || || || || Sbjct 2895226 GAGTCAGCCAACGCCATCCTGGGCGGCAGCAAGGTACGTGTCGACCAAAAGTGCAAGTCA 2895285 Query 1568 TCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTG 1627 || | || || || | || || ||||| || || ||||| || |||||||| | |||| Sbjct 2895286 TCGGCCCAGATCGACCCCACGCCCGTCATCGTGACGTCCAACACCAACATGTGCGCGGTG 2895345 Query 1628 GTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTCAAA 1687 | || ||||| ||| |||||||| |||||||||||| | ||||||| |||||||| Sbjct 2895346 ATTGACGGGAACAGCACCACCTTTGAGCACCAGCAGCCGTTACAGGACCGGATGTTCAAG 2895405 Query 1688 TTTGAA 1693 |||||| Sbjct 2895406 TTTGAA 2895411 >seq5024 Length=16258934 Score = 486 bits (538), Expect = 6e-134 Identities = 944/1378 (69%), Gaps = 28/1378 (2%) Strand=Plus/Minus Query 398 GACGTGGAGGAACATCTGCCTGGAATTTCTGACAGCTTTGTGGACTGGGTAACTGGTCAA 457 ||| |||| | || || || || ||||||||||||||||| ||||||| | | | Sbjct 1693674 GACCTGGACCAGCACCTCCCGGGTGTTTCTGACAGCTTTGTGAACTGGGTGGCCGAGAAG 1693615 Query 458 ATTTGGGAGCTGCCTCCAGAGTCAGATTTAAATTTGACTCTGGTTGAACAGCCTCAGTTG 517 |||||||||| ||||| || || | || ||| ||| | |||||| | | | Sbjct 1693614 GAGTGGGAGCTGCTGCCAGATTCTGACATGGATCTGAATCTCATAGAACAGGCGCCCCTC 1693555 Query 518 ACGGTGGCTGATAGAATTCGCCGCGTGTTCCTGTACGAGTGGAACAAATTTTCCAAG--- 574 || || || || | | | |||| || ||| ||| |||| | |||| Sbjct 1693554 ACCGTAGCCGAGAAGCTGCAGCGCGACTTTCTGACCGAATGGAGGCGGGTGAGCAAGGCC 1693495 Query 575 CAGGAGTCCAAATTCTTTGTGCAGTTTGAAAAGGGATCTGAATATTTTCATCTGCACACG 634 | |||| || || |||||||| ||||||||||| ||||| || |||||| Sbjct 1693494 CCGGAGGCCCTCTTTTTTGTGCAATTTGAAAAGGGGGAGAGCTATTTCCACCTGCACGTC 1693435 Query 635 CTTGTGGAGACCTCCGGCATCTCTTCCATGGTCCTCGGCCGCTACGTGAGTCAGATTCGC 694 || ||||||||| |||| || |||| | || ||||| | |||||||||||||||| Sbjct 1693434 CTGGTGGAGACCACCGGGGTCAAGAGCATGATGCTGGGCCGGTTCGTGAGTCAGATTCGC 1693375 Query 695 GCCCAGCTGGTGAAAGTGGTCTTCCAGGGAATTGAACC--CCAGATCAACGACTGGGTCG 752 | ||||||| | | | || || || | || ||| | | ||||| | | Sbjct 1693374 GAGAAGCTGGTCAGCTGCATTTACCGCGGGATCAAGCCGACCATGCCGA--ACTGGTTTG 1693317 Query 753 CCATCACCAAG----GTAAAGAAG--GGCGGAGCCAATAAGGTGGTGGATTCTGGGTATA 806 | | |||||| |||| | | ||||| || |||||||| || | || | Sbjct 1693316 CGGTGACCAAGACGCGTAATGGCGCCGGCGGGAGGAACAAGGTGGTAGACGACTGCTACA 1693257 Query 807 TTCCCGCCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAACCTGG 866 | ||| ||||||||| || || ||| || ||||| |||||||||||||| ||| ||| Sbjct 1693256 TCCCCAACTACCTGCTCCCCAAAACCCAGCCCGAGCTCCAGTGGGCGTGGACTAACATGG 1693197 Query 867 ACGAGTATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAGTTTC 926 | |||||| | | | ||||| | |||||| ||||||||||| || ||| | Sbjct 1693196 AGCAGTATATAAGCGTGTGTTTAAATCTTGCGGAGCGTAAACGGCTCGTGGCTCAGCATT 1693137 Query 927 TGGCAGA-ATCCTCGCAGCGCTCGCAGGAGGCGGCTTCGCAGCGTGAGT-TCTCGG--CT 982 || || | ||| | ||| |||||||| | || | || || | || Sbjct 1693136 TGACACACATCAGC-CAGA---CGCAGGAGCAGAACAAAGAGAATCAGAATCCCAATTCT 1693081 Query 983 GACCCG---GTCATCAAAAGCAAGACTTCCCAGAAATACATGGCGCTCGTCAACTGGCTC 1039 ||| || || ||| || || ||| ||||||| ||| || |||||| Sbjct 1693080 GACGCGCCTGTGATCTGGTCAAAAACCTCCGCTTGCTACATGGAGCTAATCGGGTGGCTC 1693021 Query 1040 GTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAAATCAGGAGAGCTACCTC 1099 |||| | |||||||| || || ||||| ||||||||||| | |||| |||| | Sbjct 1693020 ATGGACAAAGGCATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCCTCCTACATT 1692961 Query 1100 TCCTTCAACTCCACCGGCAACT-CTCGGAGCCAGATCAAGGCCGCGCTCGACAACGCGAC 1158 ||||||||| | ||| ||| | | ||| || || || || || || ||||| || | Sbjct 1692960 TCCTTCAACGCG-CCGTCAAATTCGCGGTCACAAATTAAAGCGGCCCTGGACAATGCCAG 1692902 Query 1159 CAAAATTATGAGTCTGACAAAAAGCGCGGTGGACTACCTCGTGGGG-AGCTCCGTTCCCG 1217 |||||| ||||| ||||| |||| || ||||||||| || ||| ||| | | | Sbjct 1692901 CAAAATCATGAGCCTGACCAAAACGGCTCCGGACTACCTGGTTGGGCAGCAGCCTGTG-G 1692843 Query 1218 AGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGCCT 1277 |||||||| | ||| || | || || || | ||||| || |||||||| | Sbjct 1692842 AGGACATTCGGGACAACCACATTTACCAGATCTTACAAATGAACGGGTACGACCCCCAGT 1692783 Query 1278 ACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGTCT 1337 | |||| ||| | || |||||| |||| ||| ||| |||||||| ||| Sbjct 1692782 AGGCGGCCTCCGTGTTCCTGGGCTGGGCTCAGAAAAAGTTCGGTAAGCGGAACACCATCT 1692723 Query 1338 GGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTG 1397 |||| | || || |||| ||||||||||||||||||||||| ||||| ||||| | | Sbjct 1692722 GGCTGTTTGGGCCTGCCAGCACCGGCAAGACCAACATCGCGGAAGCCATTGCCCATGCGG 1692663 Query 1398 TGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGG 1457 ||||||| |||||||| ||||||||||||||||| |||||||| || || || || || | Sbjct 1692662 TGCCCTTCTACGGCTGTGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCG 1692603 Query 1458 ACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCA 1517 |||| ||| | || |||||||||||||| ||||||||| |||||| || || | |||| Sbjct 1692602 ACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTTGGCCA 1692543 Query 1518 AGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCTGTTCAAA 1577 ||||||||||||| ||| ||||| || || || || || || || || || | || | Sbjct 1692542 AGGCCATCCTGGGCGGCAGCAAGGTACGTGTGGACCAAAAGTGCAAGTCATCGGCCCAGA 1692483 Query 1578 TTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGTGTGTGGTGGTGGATGGGA 1637 | || | ||||| |||| || || ||||| || |||||||| |||| | || |||| Sbjct 1692482 TCGACCCCACCCCCATCATCGTGACGTCCAACACCAACATGTGCACGGTGATTGACGGGA 1692423 Query 1638 ATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCATGTTCAAATTTGAACTGA 1697 | ||| || |||||||||||||||||| || | ||||| |||||||| |||||||| | Sbjct 1692422 ACAGCACCACGTTTGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAGTTTGAACTTA 1692363 Query 1698 CTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAGCAGGAAGTCAAGGACTTTTT 1755 | | || || | || |||| |||| | || || ||||||||||| |||||||| Sbjct 1692362 CCCACCGTCTGGATCATGACTTTGACAAGGTCACCAAACAGGAAGTCAAAGACTTTTT 1692305 Score = 232 bits (256), Expect = 2e-57 Identities = 268/357 (75%), Gaps = 7/357 (2%) Strand=Plus/Minus Query 2271 TGGGCCTTGAAGC---GGGCCCACCGAAACCAAAACCCAATCAGCAGCATCAAGATCAAG 2327 ||||| ||||| | | |||| || | || | | | ||||| || || || || | Sbjct 1691768 TGGGCTTTGAAACCTGGAGCCCCCC--AGCCCAGAGCGAATCAACAACACCAGGACAACT 1691711 Query 2328 CCCGTGGTCTTGTGCTGCCTGGTTATAACTATCTCGGACCCGGAAACGGTCTCGATCGAG 2387 | || ||||||||||| ||||| || || || ||||||||| ||||| ||||| | Sbjct 1691710 CTCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGG 1691651 Query 2388 GAGAGCCTGTCAACAGGGCAGACGAGGTCGCGCGAGAGCACGACATCTCGTACAACGAGC 2447 ||||||| |||||| |||||||| | || | | |||||||| | |||||| ||| Sbjct 1691650 GAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGGCCTACAACCAGC 1691591 Query 2448 AGCTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCACGCGGACGCCGAGTTTCAGG 2507 |||| || | || |||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 1691590 AGCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGACGCCGAGTTCCAGC 1691531 Query 2508 AGAAGCTCGCCG-ACGACACATCCTTCGGGGGAAACCTCGGAAAGGCAGTCTTTCAGGCC 2566 || ||| | | | || || || || ||||| |||||||| || || || |||||| Sbjct 1691530 AGC-GCTTGGAGCAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCGGTATTCCAGGCC 1691472 Query 2567 AAGAAAAGGGTTCTCGAACCTTTTGGCCTGGTTGAAGAGGGTGCTAAGACGGCCCCT 2623 ||||||||||||||| || ||||||| |||||||| || | ||||||||||| ||| Sbjct 1691471 AAGAAAAGGGTTCTCAAATCTTTTGGTCTGGTTGAGGAAGCGGCTAAGACGGCTCCT 1691415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14740556485915