Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq5024 365 1e-97 seq7012 338 2e-89 >seq5024 Length=16258934 Score = 365 bits (404), Expect = 1e-97 Identities = 450/614 (73%), Gaps = 6/614 (1%) Strand=Plus/Minus Query 1063 CTGACCAAGACGGCGGAGGACTACCTCGTCGGAAAAGAACCCGTCTCGGACGACGAGATT 1122 |||||||| ||||| ||||||||| || || | | || || ||| ||| ||| Sbjct 1692888 CTGACCAAAACGGCTCCGGACTACCTGGTTGGGCAGCAGCCTGT---GGAGGAC---ATT 1692835 Query 1123 CGTCAGAACCGCATCTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGG 1182 || | |||| ||| ||| |||| || || ||||| |||||||| ||| | || Sbjct 1692834 CGGGACAACCACATTTACCAGATCTTACAAATGAACGGGTACGACCCCCAGTAGGCGGCC 1692775 Query 1183 AGTATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTC 1242 | || | || ||| ||||| || | || ||||| ||||| | |||||||| Sbjct 1692774 TCCGTGTTCCTGGGCTGGGCTCAGAAAAAGTTCGGTAAGCGGAACACCATCTGGCTGTTT 1692715 Query 1243 GGACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 || ||||| | |||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct 1692714 GGGCCTGCCAGCACCGGCAAGACCAACATCGCGGAAGCCATTGCCCATGCGGTGCCCTTC 1692655 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATG 1362 || || || || ||||||||||| |||||||||||||||||||| |||||||| |||||| Sbjct 1692654 TACGGCTGTGTGAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATG 1692595 Query 1363 ATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATT 1422 | ||||||||||| |||||||| |||||||||||||| ||||| ||| || || || Sbjct 1692594 GTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTTGGCCAAGGCCATC 1692535 Query 1423 CTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 ||||| || ||| | ||||||||||| ||||| | |||| | |||||| || Sbjct 1692534 CTGGGCGGCAGCAAGGTACGTGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCC 1692475 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACT 1542 || || |||| | || |||||||||||||| || || |||||||||| || Sbjct 1692474 ACCCCCATCATCGTGACGTCCAACACCAACATGTGCACGGTGATTGACGGGAACAGCACC 1692415 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGT 1602 ||||| || || ||||||||||| | ||| ||||||| ||| | || || ||| Sbjct 1692414 ACGTTTGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAGTTTGAACTTACCCACCGT 1692355 Query 1603 TTACCCGATGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGGTCC 1662 | ||||||||| ||||| ||||||||||| || | || ||| ||||| || Sbjct 1692354 CTGGATCATGACTTTGACAAGGTCACCAAACAGGAAGTCAAAGACTTTTTCCGGTGGGCC 1692295 Query 1663 CAGGATCACCTGAC 1676 || |||||| |||| Sbjct 1692294 CAAGATCACGTGAC 1692281 Score = 163 bits (180), Expect = 8e-37 Identities = 219/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 2395 AGGACGATTCGAGAGGTCTCGTGTTCCCGGGTTACAAGTATCTAGGCCCTTTCAACGGTC 2454 ||||| | || | ||||| ||| | || || |||||||| || || || |||||||| | Sbjct 1691719 AGGACAACTCTCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGAC 1691660 Query 2455 TAGATAAAGGAAAACCCGTCAACGAGGCAGACGCTGCCGCCTTAGAGCACGACAAGGCTT 2514 | || || ||| | || ||||||||||||||||| || ||| | | |||||||||||| | Sbjct 1691659 TCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGGCCT 1691600 Query 2515 ACGACCTCGAACTCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGATAGAC 2574 || ||| | ||| || ||| ||||||||||| | |||||||| | ||||| | | Sbjct 1691599 ACAACCAGCAGCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGA-CGCC 1691541 Query 2575 G-TTTCCAGGAACGTCTCAAAGACGATACCTCTTTCGGAGGGAATCTCGGTAAAGCCATC 2633 | |||||| | || | | | ||||| ||||| || || || ||||| ||| | Sbjct 1691540 GAGTTCCAGCAGCGCTTGGAGCAAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCGGTA 1691481 Query 2634 TTTCAGGCCAAAAAGAGGGTCCTCGAGCCCTTTGGTCTGATTGAACAACCCGACAACACG 2693 || |||||||| || ||||| ||| | | ||||||||| |||| || | | || ||| Sbjct 1691480 TTCCAGGCCAAGAAAAGGGTTCTCAAATCTTTTGGTCTGGTTGAGGAAGCGGCTAAGACG 1691421 Query 2694 GC 2695 || Sbjct 1691420 GC 1691419 >seq7012 Length=11079692 Score = 338 bits (374), Expect = 2e-89 Identities = 642/939 (68%), Gaps = 37/939 (4%) Strand=Plus/Plus Query 663 CGGGGGCGCGAACAAGGTCCGGGCCGAGTCGTATATTCCCGCCTACCTGATTCCGAAACA 722 ||| |||| ||||||||| || ||||| ||||||||| ||||||| | || ||| Sbjct 2894487 CGGTGGCGGGAACAAGGTGGTGGACGAGTGCTATATTCCCAACTACCTGCTCCCCAAAAC 2894546 Query 723 GCAACCGGAAGTGCAGTGGGCGTGGACTAACGTGCCCGAGTATATAAAAGCGTGCCTGCA 782 ||||||||| | |||||||||||||||||| || |||||||||| ||||| || | Sbjct 2894547 CCAACCGGAACTTCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGTTTGAA 2894606 Query 783 CCGAGAACTGCGTGCCA--GTCTCGCGCGACTTCACTTCGAGGAGGCGGGGCTCTC---- 836 || | | | | || | | ||| | | ||| | || || | | || Sbjct 2894607 CCTCG--CGGAGCGCAAACGGCTCATGGCTCAACACCT----GACGCACGTCAGTCAGAC 2894660 Query 837 ------GCAATCCAAGGAAAATCTCGCGAGAACTGCAGACGGCGCTCCCGTGATCGCGAC 890 ||| ||| |||||| | || | | |||| | || |||||| | | Sbjct 2894661 ACAGGAGCAGAACAAAGAAAATTTGAACCCAAATTCTGACG---CGCCTGTGATCCGGTC 2894717 Query 891 CCGCGTCAGCAAACGCTACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCAC 950 | || || ||||||||||| || | ||||||||||| ||||||||||| | Sbjct 2894718 AAAAACCTCCACGCGATACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATCACGTC 2894777 Query 951 CGAGAAGGAATGGCTGCTGGAAAACAGAGAAAGCTTTCGGAG----CTTCCAGGCCTCGA 1006 || ||| ||||| | | ||| || | |||| | |||| | ||| | Sbjct 2894778 AGAAAAGCAATGGATCCAGGAGGACC----AGGCTTCCTACATCTCCTTCAACGCCGTGT 2894833 Query 1007 GCAACTCGGCGCGTCAGATCAAGACGGCCCTGCAAGGCGCCATCCAGGAG-ATGCTTCTG 1065 || || | |||||| ||| | || || | ||| || | | ||| ||| Sbjct 2894834 CAAATTCCCGGTCTCAGATTAAGGCCGCTTTGGACAATGCC-TCTAAAATTATGAGCCTG 2894892 Query 1066 ACCAAGACGGCGGAGGACTACCTCGTCGGAAAAGAACCCGTCTCGGACGACGAGATTCGT 1125 || || | | | ||||||||| | ||| | | ||||| ||| ||| ||| Sbjct 2894893 ACAAAAATGCCTCCGGACTACCTGATTGGACAGCAGCCCGT---GGAGGAC---ATTAAG 2894946 Query 1126 CAGAACCGCATCTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGT 1185 ||||||||||| ||| |||||| || ||||| ||||||||| | |||| || Sbjct 2894947 CAGAACCGCATTTACCGGATTTTACAAATGAACGGCTACGACCCCGAGTACACGGCCTCC 2895006 Query 1186 ATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGA 1245 | || | || ||| |||||||||| || ||||| || || | |||||||| || Sbjct 2895007 GTCTTTCTGGGCTGGGCTCAGAAGAAATTCGGGAAGCGGAATACCATCTGGCTGTTTGGG 2895066 Query 1246 CCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTAT 1305 ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 2895067 CCTGCTACCACGGGCAAGACCAACATTGCGGAAGCCATTGCCCATGCAGTGCCCTTTTAC 2895126 Query 1306 GGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATT 1365 || ||||| |||||||| || |||||||||||||||||||| ||| |||| || ||| | Sbjct 2895127 GGCTGCGTGAACTGGACTAATGAGAACTTTCCGTTCAACGATTGCCTCGACAAAATGGTG 2895186 Query 1366 ATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTG 1425 ||||||||||| |||||||| ||||| |||||||| || || | || || || || ||| Sbjct 2895187 ATCTGGTGGGAGGAGGGCAAGATGACTGCCAAGGTCGTAGAGTCAGCCAACGCCATCCTG 2895246 Query 1426 GGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACG 1485 || || ||| | || |||||||| ||||| | |||| | |||||| || ||| Sbjct 2895247 GGCGGCAGCAAGGTACGTGTCGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCCACG 2895306 Query 1486 CCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACG 1545 || ||||| | || |||||||||||||| || || |||||||||| || || Sbjct 2895307 CCCGTCATCGTGACGTCCAACACCAACATGTGCGCGGTGATTGACGGGAACAGCACCACC 2895366 Query 1546 TTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAG 1584 || ||||| |||||||||| ||||| ||||||| ||| Sbjct 2895367 TTTGAGCACCAGCAGCCGTTACAGGACCGGATGTTCAAG 2895405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14868540479715