Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq5024 390 3e-105 seq7012 367 4e-98 >seq5024 Length=16258934 Score = 390 bits (432), Expect = 3e-105 Identities = 525/733 (72%), Gaps = 10/733 (1%) Strand=Plus/Minus Query 848 TACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGATG 907 ||||||| ||| || |||||||| ||||||| |||||| || | || | ||||| Sbjct 1693044 TACATGGAGCTAATCGGGTGGCTCATGGACAAAGGCATCACGTCAGAAAAGCAATGGATC 1692985 Query 908 CGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCA----CGCGCGCCCA 963 | |||||| || | ||| | || |||||| | || || |||| | || Sbjct 1692984 CAGGAGGACCAGGCCTCCTACATTTCCTTCAACGC----GCCGTCAAATTCGCGGTCACA 1692929 Query 964 GATCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAACACGAAGACGGCCGCCGA 1023 || || || || || ||||| || | |||||| | || || ||||| | || Sbjct 1692928 AATTAAAGCGGCCCTGGACAATGCCAGCAAAATCATGAGCCTGACCAAAACGGCTCCGGA 1692869 Query 1024 CTACCTGGTCGG-CAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGCTGT 1082 ||||||||| || ||| | || | ||| | ||||||| || |||| | | | Sbjct 1692868 CTACCTGGTTGGGCAGCAGCCTGTGGAG-GACATTCGGGACAACCACATTTACCAGATCT 1692810 Query 1083 TTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCA 1142 | | |||||||| ||||||||| || |||| | |||| | || |||||| | | Sbjct 1692809 TACAAATGAACGGGTACGACCCCCAGTAGGCGGCCTCCGTGTTCCTGGGCTGGGCTCAGA 1692750 Query 1143 CCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGA 1202 ||||| ||||| |||||| ||||||| || ||||| |||| ||||||||||| | Sbjct 1692749 AAAAGTTCGGTAAGCGGAACACCATCTGGCTGTTTGGGCCTGCCAGCACCGGCAAGACCA 1692690 Query 1203 ACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACG 1262 || |||| || ||||| ||| ||||||||||||||||||| || ||||||||||| | Sbjct 1692689 ACATCGCGGAAGCCATTGCCCATGCGGTGCCCTTCTACGGCTGTGTGAACTGGACCAATG 1692630 Query 1263 AGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGA 1322 ||||||| || |||||||| ||||| ||||||||| | |||||||||||||||||||||| Sbjct 1692629 AGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGA 1692570 Query 1323 TGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCG 1382 |||| |||||||||| ||| |||||||||||||| |||||||||||||| || || | Sbjct 1692569 TGACCGCCAAGGTCGTGGAGTTGGCCAAGGCCATCCTGGGCGGCAGCAAGGTACGTGTGG 1692510 Query 1383 ACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNNN 1442 |||| ||||||||| ||| |||||||| ||||| ||| |||| Sbjct 1692509 ACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCCACCCCCATCATCGTGACGTCCAACA 1692450 Query 1443 NNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTCG 1502 |||||||| ||| | ||||||||| |||||||| || |||| ||||||| | Sbjct 1692449 CCAACATGTGCACGGTGATTGACGGGAACAGCACCACGTTTGAACACCAGCAGCCGTTGC 1692390 Query 1503 AGGACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACCTTCGGCAAGATCA 1562 | ||| ||||||||||||| || || ||| | | ||| | | ||| | |||| ||| Sbjct 1692389 AAGACCGGATGTTCAAGTTTGAACTTACCCACCGTCTGGATCATGACTTTGACAAGGTCA 1692330 Query 1563 CCAAGCAGGAGGT 1575 |||| ||||| || Sbjct 1692329 CCAAACAGGAAGT 1692317 Score = 181 bits (200), Expect = 3e-42 Identities = 217/292 (74%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 2162 ACCAGGACCGCGCGCGCGGCCTCGTCGTCCCCGGCTACAAGTACCTCGGGCCCTTCAACG 2221 |||||||| | | || || || || | || || |||||||||||||| |||||||||| Sbjct 1691722 ACCAGGACAACTCTCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACG 1691663 Query 2222 GACTCGACAGGGGCGAGCCCGTCAACGCGGCCGACGCGGCGGCCAAGAAGCACGACGAGG 2281 ||||||||| ||| ||||| ||||||| ||| ||||| |||||| ||||||| ||| Sbjct 1691662 GACTCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGG 1691603 Query 2282 AGTACGACCGGCTCCTCAAGGCGGGGGACAACCCGTACCTCGCCTACAACCACGCGGACG 2341 ||| ||| || ||| || | |||||||||||||||||| ||||||||||| |||| Sbjct 1691602 CCTACAACCAGCAGCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGACG 1691543 Query 2342 CCGAGTTCCAGAAGGACCT-CAGCGGCGACTCCAGCCTAGCCGGCAACGCCGCGAACGCG 2400 ||||||||||| || | | ||| || | | | |||||| || | ||| Sbjct 1691542 CCGAGTTCCAGCAGCGCTTGGAGC-AAGATACGTCTTTTGGGGGCAACCTCGGGCGAGCG 1691484 Query 2401 CTCTTCCAGGCCAAGAAGAGGGTCCTCGAGCCCTTCGGACTGGTCGAGGGAG 2452 | |||||||||||||| ||||| ||| | | || || ||||| |||| || Sbjct 1691483 GTATTCCAGGCCAAGAAAAGGGTTCTCAAATCTTTTGGTCTGGTTGAGGAAG 1691432 >seq7012 Length=11079692 Score = 367 bits (406), Expect = 4e-98 Identities = 494/690 (72%), Gaps = 10/690 (1%) Strand=Plus/Plus Query 847 ATACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGAT 906 |||||||| ||| ||| |||||||||||||||| || ||| || | || | ||||| Sbjct 2894733 ATACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATCACGTCAGAAAAGCAATGGAT 2894792 Query 907 GCGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCA----CGCGCGCCC 962 | |||||| || ||| | || ||||||| | | || | || | | Sbjct 2894793 CCAGGAGGACCAGGCTTCCTACATCTCCTTCAACGCC----GTGTCAAATTCCCGGTCTC 2894848 Query 963 AGATCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAACACGAAGACGGCCGCCG 1022 |||| |||||||| | ||||| || | || ||| | || || | | | | | Sbjct 2894849 AGATTAAGGCCGCTTTGGACAATGCCTCTAAAATTATGAGCCTGACAAAAATGCCTCCGG 2894908 Query 1023 ACTACCTGGTCGG-CAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGCTG 1081 |||||||| | || ||| | |||| ||| | || | ||| | || |||||| | Sbjct 2894909 ACTACCTGATTGGACAGCAGCCCGTGGAG-GACATTAAGCAGAACCGCATTTACCGGATT 2894967 Query 1082 TTTCGCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGC 1141 || | ||||||||||||||||||| ||| ||| | ||| | || |||||| | Sbjct 2894968 TTACAAATGAACGGCTACGACCCCGAGTACACGGCCTCCGTCTTTCTGGGCTGGGCTCAG 2895027 Query 1142 ACCGGCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACG 1201 | ||||| ||||| || ||| ||||||| || ||||| || || || |||||||| Sbjct 2895028 AAGAAATTCGGGAAGCGGAATACCATCTGGCTGTTTGGGCCTGCTACCACGGGCAAGACC 2895087 Query 1202 AACCTCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAAC 1261 ||| | || || ||||| ||| | |||||||| ||||||||||| |||||||| || Sbjct 2895088 AACATTGCGGAAGCCATTGCCCATGCAGTGCCCTTTTACGGCTGCGTGAACTGGACTAAT 2895147 Query 1262 GAGAACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAG 1321 |||||||| || |||||||| ||| | ||||| ||| | ||||||||||||||||||||| Sbjct 2895148 GAGAACTTTCCGTTCAACGATTGCCTCGACAAAATGGTGATCTGGTGGGAGGAGGGCAAG 2895207 Query 1322 ATGACGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTC 1381 ||||| |||||||||| ||| ||||| |||||||| |||||||||||||| || ||| Sbjct 2895208 ATGACTGCCAAGGTCGTAGAGTCAGCCAACGCCATCCTGGGCGGCAGCAAGGTACGTGTC 2895267 Query 1382 GACCAGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNN 1441 ||||| ||||||||| ||| |||||||| |||||||||||||| Sbjct 2895268 GACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCCACGCCCGTCATCGTGACGTCCAAC 2895327 Query 1442 NNNNACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTC 1501 ||||||||| ||| | ||||||||| ||||| || ||||||| ||||||| | Sbjct 2895328 ACCAACATGTGCGCGGTGATTGACGGGAACAGCACCACCTTTGAGCACCAGCAGCCGTTA 2895387 Query 1502 GAGGACAGGATGTTCAAGTTCGAGCTCACC 1531 ||||| ||||||||||||| || ||||| Sbjct 2895388 CAGGACCGGATGTTCAAGTTTGAAATCACC 2895417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13601498941095