Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq5024 163 8e-37 seq7012 105 2e-19 >seq5024 Length=16258934 Score = 163 bits (180), Expect = 8e-37 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2212 CGCGGTCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGC 2271 || ||||| ||| |||| || || || |||||||| || ||||||||| | |||||||| Sbjct 1691708 CGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGA 1691649 Query 2272 GAGCCTGTCAACGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCTT 2331 ||||| ||||||| || ||||| || ||||| | |||||||| || || ||| ||| Sbjct 1691648 GAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGTGCACGACAAGGCCTACAACCAGCAG 1691589 Query 2332 CTCGAGGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGACGCCGTCTTTCAAGAA 2391 ||| || | || |||||||||||| |||||||||||||||| ||||||| || || | Sbjct 1691588 CTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGACGCCGAGTTCCAGCAG 1691529 Query 2392 CGCTTGCAAGGAGATACTAGTTTGGGTGGTAAC 2424 |||||| | |||||| ||| || || ||| Sbjct 1691528 CGCTTGGAGCAAGATACGTCTTTTGGGGGCAAC 1691496 Score = 78.8 bits (86), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1336 CGGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGC 1395 ||| || |||| ||||||||||| | || || || | |||||| ||||| | || || Sbjct 1692742 CGGTAAGCGGAACACCATCTGGCTGTTTGGGCCTGCCAGCACCGGCAAGACCAACATCGC 1692683 Query 1396 GCAAGCTATAGCCCA--CGGTGCTGTCCTCTTTGGAGGAGTCAATTGGACTAATGAAAAC 1453 | |||| || ||||| |||||| | ||| || | || || ||||| ||||| ||| Sbjct 1692682 GGAAGCCATTGCCCATGCGGTGC--CCTTCTACGGCTGTGTGAACTGGACCAATGAGAAC 1692625 Query 1454 TTTCCCTTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGAC 1512 ||||| || |||| | || || |||| |||||||| ||||| || ||||| Sbjct 1692624 TTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1692566 >seq7012 Length=11079692 Score = 105 bits (116), Expect = 2e-19 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 1328 AAGGAATACGGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACT 1387 ||| ||| ||| || |||||||||||||||| | || || |||||||| || ||||| Sbjct 2895028 AAGAAATTCGGGAAGCGGAATACCATCTGGCTGTTTGGGCCTGCTACCACGGGCAAGACC 2895087 Query 1388 ATTATAGCGCAAGCTATAGCCCACGGTGCTGTCCTCTTT---GGAGGAGTCAATTGGACT 1444 | || ||| |||| || ||||| ||| || | |||| || | || || |||||| Sbjct 2895088 AACATTGCGGAAGCCATTGCCCA---TGCAGTGCCCTTTTACGGCTGCGTGAACTGGACT 2895144 Query 1445 AATGAAAACTTTCCCTTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGT 1504 ||||| |||||||| || |||| | | ||| || |||| |||||||| ||||| Sbjct 2895145 AATGAGAACTTTCCGTTCAACGATTGCCTCGACAAAATGGTGATCTGGTGGGAGGAGGGC 2895204 Query 1505 AAAATGAC 1512 || ||||| Sbjct 2895205 AAGATGAC 2895212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14574177293975