Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq1 773 0.0 >seq1 Length=126035930 Score = 773 bits (856), Expect = 0.0 Identities = 693/870 (80%), Gaps = 21/870 (2%) Strand=Plus/Minus Query 212 GAGTGTTTTGCGACA-----------TTTTGCGACACCATGTGGTCACGCTGGGTATTTA 260 ||||||||||||||| ||||||||||||| ||||||| | |||||| | Sbjct 79119878 GAGTGTTTTGCGACAGCACGTGACCCTTTTGCGACACCACGTGGTCAGGAGGGGTATAAA 79119819 Query 261 AGCCCGAGTGAGCACGCAGGGTCTCCATTTT------GAAGCGGGAGGTTTGAAC---GC 311 ||| | |||||||| |||| ||||||| | ||||| | | | || || | Sbjct 79119818 AGCGCCAGTGAGCATGCAGCAGCTCCATTCTTTCCGTGAAGCACGTG-TGTGTACATAGG 79119760 Query 312 GCAGCCGCCATGCCGGGGTTTTACGAGATTGTGATTAAGGTCCCCAGCGACCTTGACGAG 371 |||| |||| ||| ||||||||||||||| | ||||| ||||||||||| || ||| Sbjct 79119759 AAAGCCATTATGCTGGGATTTTACGAGATTGTGGTGAAGGTTCCCAGCGACCTGGATGAG 79119700 Query 372 CATCTGCCCGGCATTTCTGACAGCTTTGTGAACTGGGTGGCCGAGAAGGAATGGGAGTTG 431 || || ||| ||||||||| |||||| ||||||||| | || ||||||||||| || Sbjct 79119699 CACCTACCCAATATTTCTGACTCCTTTGTAAACTGGGTGTCAGAAAAGGAATGGGAACTG 79119640 Query 432 CCGCCAGATTCTGACATGGATCTGAATCTGATTGAGCAGGCACCCCTGACCGTGGCCGAG 491 |||||||||||||||||||| | |||||||| || ||| | || |||||| ||||| || Sbjct 79119639 CCGCCAGATTCTGACATGGACATAAATCTGATAGAACAGACGCCGCTGACCATGGCCAAG 79119580 Query 492 AAGCTGCAGCGCGACTTTCTGACGGAATGGCGCCGTGTGAGTAAGGCCCCGGAGGCCCTT 551 ||||| |||||| ||||||||||||| ||| | ||||| ||||||||||||||||| Sbjct 79119579 AAGCTCCAGCGCCACTTTCTGACGGAGTGGAGGTCGGTGAGCAAGGCCCCGGAGGCCCTC 79119520 Query 552 TTCTTTGTGCAATTTGAGAAGGGAGAGAGCTACTTCCACATGCACGTGCTCGTGGAAACC 611 || ||||| |||||||| ||||| ||| |||||||||| ||||| | || ||||||||| Sbjct 79119519 TTTTTTGTCCAATTTGAAAAGGGGGAGTCCTACTTCCACCTGCACATCCTGGTGGAAACC 79119460 Query 612 ACCGGGGTGAAATCCATGGTTTTGGGACGTTTCCTGAGTCAGATTCGCGAAAAACTGATT 671 || || ||||| |||||||||||| || | | || ||||| | |||||| || Sbjct 79119459 ACGGGCATGAAAAGCATGGTTTTGGGCCGATATTTAGCCCAAATTCGTCAGAAACTGGTT 79119400 Query 672 CAGAGAATTTACCGCGGGATCGAGCCGACTTTGCCAAACTGGTTCGCGGTCACAAAGACC 731 | | ||||||||||||||||| ||||| |||||||||||||||||||||| || || Sbjct 79119399 AACCGCATTTACCGCGGGATCGAACCGACCATGCCAAACTGGTTCGCGGTCACTAAAACG 79119340 Query 732 AGAAATGGCGCCGGAGGCGGGAACAAGGTGGTGGATGAGTGCTACATCCCCAATTACTTG 791 ||||||||||| | ||||||||||||||||| || |||||||||||||| ||| || Sbjct 79119339 CATAATGGCGCCGGTTGGGGGAACAAGGTGGTGGACGATTGCTACATCCCCAACTACCTG 79119280 Query 792 CTCCCCAAAACCCAGCCTGAGCTCCAGTGGGCGTGGACTAATATGGAACAGTATTTAAGC 851 ||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||| ||||| Sbjct 79119279 CTCCCCAAAACCCAGCCCGAGCTCCAGTGGGAGTGGACTAACATGGAGCAGTATATAAGC 79119220 Query 852 GCCTGTTTGAATCTCACGGAGCGTAAACGGTTGGTGGCGCAGCATCTGACGCACGTGTCG 911 || |||||||| || | |||| ||| || | ||||| |||||| |||| ||||| Sbjct 79119219 GCGTGTTTGAACCTGGCAGAGCACAAATGGCTTGTGGCACAGCATTTGACACACGTCAGC 79119160 Query 912 CAGACGCAGGAGCAGAACAAAGAGAATCAGAATCCCAATTCTGATGCGCCGGTGATCAGA 971 ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| Sbjct 79119159 CAGACGCAGGAGCAGAACAGAGAGAATCAGAATCCCAATTCTGACGCGCCGGTAATCAGG 79119100 Query 972 TCAAAAACTTCAGCCAGGTACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATTACC 1031 ||||||||||| || | |||||||||||||| |||||||| ||||| | |||| Sbjct 79119099 TCAAAAACTTCCGCTGGCTACATGGAGCTGGTGGGGTGGCTGGTGGAGTGCAGAATTAAG 79119040 Query 1032 TCGGAGAAGCAGTGGATCCAGGAGGACCAG 1061 || || ||||| |||||||||||||||||| Sbjct 79119039 TCAGAAAAGCAATGGATCCAGGAGGACCAG 79119010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860474269840