Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq1 753 0.0 >seq1 Length=126035930 Score = 753 bits (834), Expect = 0.0 Identities = 676/844 (80%), Gaps = 12/844 (1%) Strand=Plus/Minus Query 225 TTTGCGACACCACGTGGCCGCTGAGGGTATATATTCTCGAGTGAGCGAACCAGGAGCTCC 284 ||||||||||||||||| | ||||||| | | | ||||||| | ||| |||||| Sbjct 79119851 TTTGCGACACCACGTGGTCAGGAGGGGTATAAAAGCGCCAGTGAGC-ATGCAGCAGCTCC 79119793 Query 285 ATTTTGACCGCGAA------ATTTGAAC-GAGCAGCAGCC---ATGCCGGGGTTCTACGA 334 ||| | ||| ||| | || || || | |||| |||| ||| || ||||| Sbjct 79119792 ATTCTTTCCGTGAAGCACGTGTGTGTACATAGGA-AAGCCATTATGCTGGGATTTTACGA 79119734 Query 335 GATTGTCCTGAAGGTCCCGAGTGACCTGGACGAGCGCCTGCCGGGCATTTCTAACTCGTT 394 |||||| ||||||| || || |||||||| |||| ||| || |||||| |||| || Sbjct 79119733 GATTGTGGTGAAGGTTCCCAGCGACCTGGATGAGCACCTACCCAATATTTCTGACTCCTT 79119674 Query 395 TGTTAACTGGGTGGCCGAGAAGGAATGGGACGTGCCGCCGGATTCTGACATGGATCCGAA 454 ||| ||||||||| | || ||||||||||| ||||||| |||||||||||||| || Sbjct 79119673 TGTAAACTGGGTGTCAGAAAAGGAATGGGAACTGCCGCCAGATTCTGACATGGACATAAA 79119614 Query 455 TCTGATTGAGCAGGCACCCCTGACCGTGGCCGAAAAGCTTCAGCGCGAGTTCCTGGTGGA 514 |||||| || ||| | || |||||| ||||| | ||||| |||||| | || ||| ||| Sbjct 79119613 TCTGATAGAACAGACGCCGCTGACCATGGCCAAGAAGCTCCAGCGCCACTTTCTGACGGA 79119554 Query 515 GTGGCGCCGCGTGAGTAAGGCCCCGGAGGCCCTCTTTTTTGTCCAGTTCGAAAAGGGGGA 574 |||| | ||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct 79119553 GTGGAGGTCGGTGAGCAAGGCCCCGGAGGCCCTCTTTTTTGTCCAATTTGAAAAGGGGGA 79119494 Query 575 GACCTACTTCCACCTGCACGTGCTGATTGAGACCATCGGGGTCAAATCCATGGTGGTCGG 634 | ||||||||||||||||| | ||| | || |||| || | ||| |||||| | || Sbjct 79119493 GTCCTACTTCCACCTGCACATCCTGGTGGAAACCACGGGCATGAAAAGCATGGTTTTGGG 79119434 Query 635 CCGCTACGTGAGCCAGATTAAAGAGAAGCTGGTGACCCGCATCTACCGCGGGGTCGAGCC 694 ||| || | ||| ||| |||| ||||| | |||||| ||||||||| |||| || Sbjct 79119433 CCGATATTTAGCCCAAATTCGTCAGAAACTGGTTAACCGCATTTACCGCGGGATCGAACC 79119374 Query 695 GCAGCTTCCGAACTGGTTCGCGGTGACCAAAACGCGAAATGGCGCCGGGGGCGGGAACAA 754 | | || |||||||||||||| || ||||||| ||||||||||| | |||||||| Sbjct 79119373 GACCATGCCAAACTGGTTCGCGGTCACTAAAACGCATAATGGCGCCGGTTGGGGGAACAA 79119314 Query 755 GGTGGTGGACGACTGCTACATCCCCAACTACCTGCTCCCCAAGACCCAGCCCGAGCTCCA 814 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 79119313 GGTGGTGGACGATTGCTACATCCCCAACTACCTGCTCCCCAAAACCCAGCCCGAGCTCCA 79119254 Query 815 GTGGGCGTGGACTAACATGGACCAGTATTTAAGCGCCTGTTTGAATCTCGCGGAGCGTAA 874 ||||| ||||||||||||||| |||||| ||||||| |||||||| || || |||| || Sbjct 79119253 GTGGGAGTGGACTAACATGGAGCAGTATATAAGCGCGTGTTTGAACCTGGCAGAGCACAA 79119194 Query 875 ACGGCTGGTGGCGCAGCATCTGACGCACGTGTCGCAGACGCAGGAGCAGAACAAAGAGAA 934 | |||| ||||| |||||| |||| ||||| ||||||||||||||||||| |||||| Sbjct 79119193 ATGGCTTGTGGCACAGCATTTGACACACGTCAGCCAGACGCAGGAGCAGAACAGAGAGAA 79119134 Query 935 TCAGAACCCCAATTCTGACGCGCCGGTCATCAGGTCAAAAACCTCAGCCAGGTACATGGA 994 |||||| |||||||||||||||||||| |||||||||||||| || || | |||||||| Sbjct 79119133 TCAGAATCCCAATTCTGACGCGCCGGTAATCAGGTCAAAAACTTCCGCTGGCTACATGGA 79119074 Query 995 GCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATTCAGGAGGA 1054 |||||| |||||||||||||| || | || | |||||||||||||||||| |||||||| Sbjct 79119073 GCTGGTGGGGTGGCTGGTGGAGTGCAGAATTAAGTCAGAAAAGCAATGGATCCAGGAGGA 79119014 Query 1055 CCAG 1058 |||| Sbjct 79119013 CCAG 79119010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15010870973260