Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq1 756 0.0 >seq1 Length=126035930 Score = 756 bits (838), Expect = 0.0 Identities = 676/844 (80%), Gaps = 11/844 (1%) Strand=Plus/Minus Query 242 TTTTGCGACACCACGTGGCCATTTAGGGTATATATGGCCGAGTGAGCGAGCAGGATCTCC 301 |||||||||||||||||| || ||||||| | | | ||||||| |||| | |||| Sbjct 79119852 TTTTGCGACACCACGTGGTCAGGAGGGGTATAAAAGCGCCAGTGAGCATGCAGCAGCTCC 79119793 Query 302 ATTTTGACCGCGAA------ATTTGAAC-GAGCAGCAGCC---ATGCCGGGCTTCTACGA 351 ||| | ||| ||| | || || || | |||| |||| ||| || ||||| Sbjct 79119792 ATTCTTTCCGTGAAGCACGTGTGTGTACATAGGA-AAGCCATTATGCTGGGATTTTACGA 79119734 Query 352 GATCGTGATCAAGGTGCCGAGCGACCTGGACGAGCACCTGCCGGGCATTTCTGACTCGTT 411 ||| ||| | ||||| || ||||||||||| |||||||| || ||||||||||| || Sbjct 79119733 GATTGTGGTGAAGGTTCCCAGCGACCTGGATGAGCACCTACCCAATATTTCTGACTCCTT 79119674 Query 412 TGTGAGCTGGGTGGCCGAGAAGGAATGGGAGCTGCCCCCGGATTCTGACATGGATCTGAA 471 ||| | ||||||| | || ||||||||||| ||||| || |||||||||||||| | || Sbjct 79119673 TGTAAACTGGGTGTCAGAAAAGGAATGGGAACTGCCGCCAGATTCTGACATGGACATAAA 79119614 Query 472 TCTGATTGAGCAGGCACCCCTGACCGTGGCCGAGAAGCTGCAGCGCGACTTCCTGGTCCA 531 |||||| || ||| | || |||||| ||||| ||||||| |||||| |||| ||| | Sbjct 79119613 TCTGATAGAACAGACGCCGCTGACCATGGCCAAGAAGCTCCAGCGCCACTTTCTGACGGA 79119554 Query 532 ATGGCGCCGCGTGAGTAAGGCCCCGGAGGCCCTCTTCTTTGTTCAGTTCGAGAAGGGCGA 591 ||| | ||||| |||||||||||||||||||| ||||| || || || ||||| || Sbjct 79119553 GTGGAGGTCGGTGAGCAAGGCCCCGGAGGCCCTCTTTTTTGTCCAATTTGAAAAGGGGGA 79119494 Query 592 GTCCTACTTCCACCTCCATATTCTGGTGGAGACCACGGGGGTCAAATCCATGGTGCTGGG 651 ||||||||||||||| || || |||||||| |||||||| | ||| |||||| |||| Sbjct 79119493 GTCCTACTTCCACCTGCACATCCTGGTGGAAACCACGGGCATGAAAAGCATGGTTTTGGG 79119434 Query 652 CCGCTTCCTGAGTCAGATTAGGGACAAGCTGGTGCAGACCATCTACCGCGGGATCGAGCC 711 ||| | | || ||| | | || ||||| | ||| |||||||||||||| || Sbjct 79119433 CCGATATTTAGCCCAAATTCGTCAGAAACTGGTTAACCGCATTTACCGCGGGATCGAACC 79119374 Query 712 GACCCTGCCCAACTGGTTCGCGGTGACCAAGACGCGTAATGGCGCCGGAGGGGGGAACAA 771 |||| |||| |||||||||||||| || || |||| |||||||||||| |||||||||| Sbjct 79119373 GACCATGCCAAACTGGTTCGCGGTCACTAAAACGCATAATGGCGCCGGTTGGGGGAACAA 79119314 Query 772 GGTGGTGGACGAGTGCTACATCCCCAACTACCTCCTGCCCAAGACTCAGCCCGAGCTGCA 831 |||||||||||| |||||||||||||||||||| || ||||| || ||||||||||| || Sbjct 79119313 GGTGGTGGACGATTGCTACATCCCCAACTACCTGCTCCCCAAAACCCAGCCCGAGCTCCA 79119254 Query 832 GTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCCTGTTTGAACCTGGCCGAGCGCAA 891 ||||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| Sbjct 79119253 GTGGGAGTGGACTAACATGGAGCAGTATATAAGCGCGTGTTTGAACCTGGCAGAGCACAA 79119194 Query 892 ACGGCTCGTGGCGCAGCACCTGACCCACGTCAGCCAGACCCAGGAGCAGAACAAGGAGAA 951 | |||| ||||| ||||| |||| |||||||||||||| ||||||||||||| ||||| Sbjct 79119193 ATGGCTTGTGGCACAGCATTTGACACACGTCAGCCAGACGCAGGAGCAGAACAGAGAGAA 79119134 Query 952 TCTGAACCCCAATTCTGACGCGCCTGTCATCCGGTCAAAAACCTCCGCGCGCTACATGGA 1011 || ||| ||||||||||||||||| || ||| |||||||||| ||||| |||||||||| Sbjct 79119133 TCAGAATCCCAATTCTGACGCGCCGGTAATCAGGTCAAAAACTTCCGCTGGCTACATGGA 79119074 Query 1012 GCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGA 1071 |||||| |||||||||||||| | | || | || || ||||| |||||||||||||| Sbjct 79119073 GCTGGTGGGGTGGCTGGTGGAGTGCAGAATTAAGTCAGAAAAGCAATGGATCCAGGAGGA 79119014 Query 1072 CCAG 1075 |||| Sbjct 79119013 CCAG 79119010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14985271534380